Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2533 ATGGAACGGTACGGCCGTCCCGGCGAAGGGCCGCAGCCTGATCCGCCGCCGGAGTGGAACGTCGGCGCCGGCGACACGGGGCTCGAAGAGTCTATGTGGAAGCTTGGATTGGGTGGTGGCACCGAATCGTACCCTCAGAGGCCTGATGAAGCTGATTGTATCTATTATCTCAAGACAGGTTTTTGCGGCTATGGTTCGCGTTGTCGGTTCAACCACCCACGTGACCGTGGCGCGGTTATTGGAGCTGCCAGGAGTGGAGGGGAGTATCCGGAGCGTGCGGGCCAGCCTCTATGCCAGTATTTTATGAGGACAGGATCATGCAAATTCGGTTCTTCTTGCAAGTACAACCATCCTAGGCAGGCAGCAGGAACTCCTGCACTTGTCTCACTAAATTATTATGGATATCCGTTGCGAGTGGGAGAGAAAGAGTGTTCCTATTACGTGAAAACTGGGCAATGCAAGTTTGGTGCTACTTGTAAATTCCATCATCCACAGCCTGCAGGTGTCCAAATTCCCGCACCATCACCAGTTCCCCCGGTTTCACCTCTACCTGTACAGGTACCTTCTCCATTATATCCAACCGTGCAGCCTCCATCTGGTCCTTCGCAACAGCAATATAGTGTACTGGTTGCAAGGCCTCCGTTGCTGCCTGGCTCATTAGTCCAGGGCCCTTATGGGCCTGTGGTAGTGTCCCCTGCCATGGTCCCCTTTCCAGGCTGGAATCCTTATCAGGCTCAAGCAACAAGCCCCCTACTTCCCTCTAGTACTCCATCTAATGTTGGTCCAACACAGCTTTACAGGATAACCCAGCTGCCTTCTCAGGCAACTGGGTATTCTGCACCTTATCAACCTTCTGGCCCCTCTGTTGATCCTTCAGGTAGTAGTACTCAGAAGGAGAACCCATATCCTGAAAGGCCTGATCAACCAGAATGTCAGTATTACATGAAAACAGGGGAATGTAAATTTGGTCCATCATGTAGATATCATCATCCATCAGACCTTAATGCACCGAAGGGGAATGTGGCCCTTAGTCCTGTGGGTCTTCCTTTGCGCCCGGGGGCACCACCTTGCACTCATTATACGCAGCGTGGAATCTGTAAGTTTGGTCCTGCATGCAAATTTGATCATCCCATGGGTTCTCTCAGTTATAGCCCATCTGCTTCTTCCTTGGCTGATATGCCGGTTGCACCGTATCCCGTGGGTTCCTCAATGGGCACTCTTGCTCCATCATCATCTTCATCAGAGTTGCGGCCTGAACTTGCTTCAGGATTGAGCAAGGAGTCTGTTTCATCCAGAATGTCTTCATCGATGAGCACTTCAAGTGGATCAGTTGGCTTGACCTTGTCAACTGCAGGACCAATTTCTCAATCGGGCACCCAACCCTCTGCTCAGAGTTCCAGTTCTTCAGCAACTGCCAGCAGCGCCGCAACAAGCAGCGCCACATCTCACACCTCAAGCTAA 1461 0.5195 MERYGRPGEGPQPDPPPEWNVGAGDTGLEESMWKLGLGGGTESYPQRPDEADCIYYLKTGFCGYGSRCRFNHPRDRGAVIGAARSGGEYPERAGQPLCQYFMRTGSCKFGSSCKYNHPRQAAGTPALVSLNYYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPAGVQIPAPSPVPPVSPLPVQVPSPLYPTVQPPSGPSQQQYSVLVARPPLLPGSLVQGPYGPVVVSPAMVPFPGWNPYQAQATSPLLPSSTPSNVGPTQLYRITQLPSQATGYSAPYQPSGPSVDPSGSSTQKENPYPERPDQPECQYYMKTGECKFGPSCRYHHPSDLNAPKGNVALSPVGLPLRPGAPPCTHYTQRGICKFGPACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSMGTLAPSSSSSELRPELASGLSKESVSSRMSSSMSTSSGSVGLTLSTAGPISQSGTQPSAQSSSSSATASSAATSSATSHTSS* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2533 486 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Ahy11g2533 486 SUPERFAMILY CCCH zinc finger 355 381 IPR036855 GO:0046872
Ahy11g2533 486 MobiDBLite consensus disorder prediction 1 25 - -
Ahy11g2533 486 Gene3D - 303 388 - -
Ahy11g2533 486 Gene3D - 89 172 - -
Ahy11g2533 486 MobiDBLite consensus disorder prediction 404 486 - -
Ahy11g2533 486 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Ahy11g2533 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 354 378 IPR000571 GO:0046872
Ahy11g2533 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 307 331 IPR000571 GO:0046872
Ahy11g2533 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Ahy11g2533 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Ahy11g2533 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Ahy11g2533 486 SUPERFAMILY CCCH zinc finger 308 332 IPR036855 GO:0046872
Ahy11g2533 486 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Ahy11g2533 486 SUPERFAMILY CCCH zinc finger 95 120 IPR036855 GO:0046872
Ahy11g2533 486 MobiDBLite consensus disorder prediction 276 310 - -
Ahy11g2533 486 Gene3D - 41 84 - -
Ahy11g2533 486 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Ahy11g2533 486 ProSiteProfiles Zinc finger C3H1-type profile. 351 379 IPR000571 GO:0046872
Ahy11g2533 486 ProSiteProfiles Zinc finger C3H1-type profile. 305 333 IPR000571 GO:0046872
Ahy11g2533 486 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Ahy11g2533 486 SMART c3hfinal6 305 332 IPR000571 GO:0046872
Ahy11g2533 486 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Ahy11g2533 486 SMART c3hfinal6 351 378 IPR000571 GO:0046872
Ahy11g2533 486 SMART c3hfinal6 140 165 IPR000571 GO:0046872
Ahy11g2533 486 SUPERFAMILY CCCH zinc finger 139 166 IPR036855 GO:0046872
Ahy11g2533 486 PANTHER PROTEIN PHOSPHATASE RELATED 1 471 - -
Ahy11g2533 486 MobiDBLite consensus disorder prediction 276 302 - -
Ahy11g2533 486 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2533 Ahy-Chr11 141158013 141162395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g2533 1 453 C2H2 Transcription Factor Family AT5G18550 55.388 2.71e-153 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy11g2533 zf-CCCH 9.50E-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2533 - - gmx:100789405 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2533 11 141158013 141162395 Ahy11g2533 11 141158013 141162395 ECH
Ahy11g2533 11 141158013 141162395 Ahy1g2392 1 102014146 102018674 hybridization
Ahy11g2533 11 141158013 141162395 Ahy20g0176 20 1513995 1520619 PCT
Ahy11g2533 11 141158013 141162395 Ahy10g0011 10 200816 207493 PCT
Ahy20g0176 20 1513995 1520619 Ahy11g2533 11 141158013 141162395 PCT
Ahy10g0011 10 200816 207493 Ahy11g2533 11 141158013 141162395 PCT