LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy11g2532	ATGTCAACCTCTAGAACCTCATCAGATACACTACACACCCCCTCCTTCATGAAGGGATATGAAGAACCAAACAACAACAATCAAAACCAGAACCAAATATGCTTGTCTACACTTCTCCAAAGAAACACATCAACATCATCATCATCATGTGGTGAAAAAAGAGGGAGAAGGAAACAAGCAGAGCCAGGTAGGTTTCTTGGTGTGAGAAGAAGACCTTGGGGAAGATATGCTGCTGAGATCAGAGACCCTACAACCAAAGAAAGACATTGGCTTGGTACCTTTGACACTGCTCAAGAAGCTGCTCTTGCTTATGACAGAGCTGCTTTGTCCATGAAAGGAAACCAAGCTAGAACTAACTTCATCTATTCTGATAACATCAACTTCCATGCTCTTCTCACACCTATGGATCTTCAAGCTCTCTTGCCACCACCACCTCCTCCTCCCCCACCATCTTCTCACACCAAACAACTTGCACCTTCCAATCAGAATAAGATTAAGAACAGTAATAGTAACAATAATAGTAATACTAATGTTGTTGCTGCTGCATATGGTTGTTCAGTTCAGGATGATGATAACTTGTTCTTTTCAACAACTGATCATCATAGTAATAACAACAACTCTGGATATCTTGAATGCATAGTTCCTGATAAATGTTTCAGGCCTACTGCTACTACTACTGCTGATTCAAGTTCCAACAGTAGTTGTTCAAATAACAACAACTACTCATCAAGAAAGAGCAATGTCAGTGAAAACTCATCATCATTCTCTTGTGATAATAACTTTCCATCAGACTACTTTTGTTATCCAACAAGTGAAGTAGTTAGTGAAGGGTTCTCATCATGGGATTGGAGCTGCAGTGAGCTTTCAGCTATATTTAACAATTCATCATCATCATCATCATCATCAAGAAGGGTATTAGAAGGAGGAGGATGCATGGATGCACTGTATCCCATCATAACTGATGAGAACAATAATAACAATACAAGCTTCTATGATGGGGTGATGATGAATAATCATCATAATCATAATAATGCTGCTTCATCTTCTTCAACAAACTGCTCAGTAGACATGGGATACCCACTCTTCTGA	1089	0.3939	MSTSRTSSDTLHTPSFMKGYEEPNNNNQNQNQICLSTLLQRNTSTSSSSCGEKRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGNQARTNFIYSDNINFHALLTPMDLQALLPPPPPPPPPSSHTKQLAPSNQNKIKNSNSNNNSNTNVVAAAYGCSVQDDDNLFFSTTDHHSNNNNSGYLECIVPDKCFRPTATTTADSSSNSSCSNNNNYSSRKSNVSENSSSFSCDNNFPSDYFCYPTSEVVSEGFSSWDWSCSELSAIFNNSSSSSSSSRRVLEGGGCMDALYPIITDENNNNNTSFYDGVMMNNHHNHNNAASSSSTNCSVDMGYPLF*	363

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ahy11g2532	362	MobiDBLite	consensus disorder prediction	137	173	-	-
Ahy11g2532	362	SUPERFAMILY	DNA-binding domain	65	122	IPR016177	GO:0003677
Ahy11g2532	362	MobiDBLite	consensus disorder prediction	155	173	-	-
Ahy11g2532	362	MobiDBLite	consensus disorder prediction	43	64	-	-
Ahy11g2532	362	PRINTS	Ethylene responsive element binding protein signature	87	103	IPR001471	GO:0003700\|GO:0006355
Ahy11g2532	362	PRINTS	Ethylene responsive element binding protein signature	65	76	IPR001471	GO:0003700\|GO:0006355
Ahy11g2532	362	ProSiteProfiles	AP2/ERF domain profile.	64	121	IPR001471	GO:0003700\|GO:0006355
Ahy11g2532	362	MobiDBLite	consensus disorder prediction	138	154	-	-
Ahy11g2532	362	MobiDBLite	consensus disorder prediction	224	243	-	-
Ahy11g2532	362	Gene3D	AP2/ERF domain	64	122	IPR036955	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy11g2532	Ahy-Chr11	141155087	141156525	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy11g2532	30	233	AP2-EREBP Transcription Factor Family	AT5G18560	44.444	4.51e-55	182

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Ahy11g2532		AP2	1.70E-12	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy11g2532	-		-	aip:110263494	602.823

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Ahy11g2532	11	141155087	141156525	Ahy1g2393	1	102020374	102021450	hybridization
Ahy11g2532	11	141155087	141156525	Ahy20g0174	20	1466952	1468489	PCT
Ahy11g2532	11	141155087	141156525	Ahy10g0010	10	190763	191836	PCT
Ahy20g0174	20	1466952	1468489	Ahy11g2532	11	141155087	141156525	PCT
Ahy10g0010	10	190763	191836	Ahy11g2532	11	141155087	141156525	PCT

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