Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2532 ATGTCAACCTCTAGAACCTCATCAGATACACTACACACCCCCTCCTTCATGAAGGGATATGAAGAACCAAACAACAACAATCAAAACCAGAACCAAATATGCTTGTCTACACTTCTCCAAAGAAACACATCAACATCATCATCATCATGTGGTGAAAAAAGAGGGAGAAGGAAACAAGCAGAGCCAGGTAGGTTTCTTGGTGTGAGAAGAAGACCTTGGGGAAGATATGCTGCTGAGATCAGAGACCCTACAACCAAAGAAAGACATTGGCTTGGTACCTTTGACACTGCTCAAGAAGCTGCTCTTGCTTATGACAGAGCTGCTTTGTCCATGAAAGGAAACCAAGCTAGAACTAACTTCATCTATTCTGATAACATCAACTTCCATGCTCTTCTCACACCTATGGATCTTCAAGCTCTCTTGCCACCACCACCTCCTCCTCCCCCACCATCTTCTCACACCAAACAACTTGCACCTTCCAATCAGAATAAGATTAAGAACAGTAATAGTAACAATAATAGTAATACTAATGTTGTTGCTGCTGCATATGGTTGTTCAGTTCAGGATGATGATAACTTGTTCTTTTCAACAACTGATCATCATAGTAATAACAACAACTCTGGATATCTTGAATGCATAGTTCCTGATAAATGTTTCAGGCCTACTGCTACTACTACTGCTGATTCAAGTTCCAACAGTAGTTGTTCAAATAACAACAACTACTCATCAAGAAAGAGCAATGTCAGTGAAAACTCATCATCATTCTCTTGTGATAATAACTTTCCATCAGACTACTTTTGTTATCCAACAAGTGAAGTAGTTAGTGAAGGGTTCTCATCATGGGATTGGAGCTGCAGTGAGCTTTCAGCTATATTTAACAATTCATCATCATCATCATCATCATCAAGAAGGGTATTAGAAGGAGGAGGATGCATGGATGCACTGTATCCCATCATAACTGATGAGAACAATAATAACAATACAAGCTTCTATGATGGGGTGATGATGAATAATCATCATAATCATAATAATGCTGCTTCATCTTCTTCAACAAACTGCTCAGTAGACATGGGATACCCACTCTTCTGA 1089 0.3939 MSTSRTSSDTLHTPSFMKGYEEPNNNNQNQNQICLSTLLQRNTSTSSSSCGEKRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGNQARTNFIYSDNINFHALLTPMDLQALLPPPPPPPPPSSHTKQLAPSNQNKIKNSNSNNNSNTNVVAAAYGCSVQDDDNLFFSTTDHHSNNNNSGYLECIVPDKCFRPTATTTADSSSNSSCSNNNNYSSRKSNVSENSSSFSCDNNFPSDYFCYPTSEVVSEGFSSWDWSCSELSAIFNNSSSSSSSSRRVLEGGGCMDALYPIITDENNNNNTSFYDGVMMNNHHNHNNAASSSSTNCSVDMGYPLF* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2532 362 MobiDBLite consensus disorder prediction 137 173 - -
Ahy11g2532 362 SUPERFAMILY DNA-binding domain 65 122 IPR016177 GO:0003677
Ahy11g2532 362 MobiDBLite consensus disorder prediction 155 173 - -
Ahy11g2532 362 MobiDBLite consensus disorder prediction 43 64 - -
Ahy11g2532 362 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Ahy11g2532 362 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Ahy11g2532 362 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Ahy11g2532 362 MobiDBLite consensus disorder prediction 138 154 - -
Ahy11g2532 362 MobiDBLite consensus disorder prediction 224 243 - -
Ahy11g2532 362 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Ahy11g2532 362 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Ahy11g2532 362 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF086 10 362 - -
Ahy11g2532 362 CDD AP2 64 120 IPR001471 GO:0003700|GO:0006355
Ahy11g2532 362 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 362 - -
Ahy11g2532 362 Pfam AP2 domain 67 113 IPR001471 GO:0003700|GO:0006355
Ahy11g2532 362 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2532 Ahy-Chr11 141155087 141156525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g2532 30 233 AP2-EREBP Transcription Factor Family AT5G18560 44.444 4.51e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy11g2532 AP2 1.70E-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2532 - - aip:110263494 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2532 11 141155087 141156525 Ahy1g2393 1 102020374 102021450 hybridization
Ahy11g2532 11 141155087 141156525 Ahy20g0174 20 1466952 1468489 PCT
Ahy11g2532 11 141155087 141156525 Ahy10g0010 10 190763 191836 PCT
Ahy20g0174 20 1466952 1468489 Ahy11g2532 11 141155087 141156525 PCT
Ahy10g0010 10 190763 191836 Ahy11g2532 11 141155087 141156525 PCT