Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ahy11g2422 | ATGCCCACTTCCGACGACTGCTCCGATGACGCCTGCAGCATTTGTCTTGAACCCTACACCGCCAACGACCCCGCCACTATTACCAGTTGCAAACATGATTATCATCTGCATTGTATTATTGAATGGTCACAGAGAAGCAAAGAGTGCCCAATATGTTGGCAGTTACTTAGCTTAAAAGACCCCACCAGCCAAGAGCTTCTAGCTGCAGTGGAGGCTGAAAAACGCTTAATATCCAGAAATGAACATTCATCTTCATACGCCAGCTCTCCTAGTCCCCTTGAACGACTCAATGATGATCATGATTATCCTTGTTCAGATGACTCTGATCTTGATGAGCAACTTATGCAACACCTAGTTGCTACTGCAGCAAGCACAACTGGTCATGTTCACAGACGAAAAACGCAGAGATATTCTGGTGCAGGTCCATCAGAGGTTCTTGTTTCAAATTATTCTATTCCAGCTTCTAGGATTCAGCCACCATCTGAGGGTAGTGTATCATCATCTTCTGAGAGTGAAGTCTCTTTAAAGCCCAGCTGGCAACCACTTGAGAGTGATAGGAGAGTGAACACTTCTGAAATGTTCTCCTTCCCCAAGTCCATCAAGTCCAAATTTTCTTCTGCTTCGGCAAGATATAAGGAATCAATTTCAAAAAGCACTCGAGGCCTTAAAGAGAAGTTGATTGCTCATAATGCCTCAGTGAAAGAGCTCAGTAAAGGTGTTCGGCGTGAGATGAATGTAGGCATTGCTGGTGTTGCAAAGATGATCGAACATCTTGATCTTTCGTCGAAACGGTCAAGTACCATCAGGCCAGTCAATGGTAGGGGCATCTCTATCATCCCCTTCAAAGGGAAGTCTGTCCAGCAGAATAATTCCATTGAGCAGCAGCAATCTGGAGTTTTGGTTTGTCATATTAGTTCAGACTCTCCATCTCTTGTTCCTCCTCCAACTCCAAGAGTTCAGGAGTGA | 966 | 0.4472 | MPTSDDCSDDACSICLEPYTANDPATITSCKHDYHLHCIIEWSQRSKECPICWQLLSLKDPTSQELLAAVEAEKRLISRNEHSSSYASSPSPLERLNDDHDYPCSDDSDLDEQLMQHLVATAASTTGHVHRRKTQRYSGAGPSEVLVSNYSIPASRIQPPSEGSVSSSSESEVSLKPSWQPLESDRRVNTSEMFSFPKSIKSKFSSASARYKESISKSTRGLKEKLIAHNASVKELSKGVRREMNVGIAGVAKMIEHLDLSSKRSSTIRPVNGRGISIIPFKGKSVQQNNSIEQQQSGVLVCHISSDSPSLVPPPTPRVQE* | 322 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ahy11g2422 | 321 | Pfam | Ring finger domain | 11 | 52 | IPR001841 | - | |
Ahy11g2422 | 321 | ProSiteProfiles | Zinc finger RING-type profile. | 12 | 52 | IPR001841 | - | |
Ahy11g2422 | 321 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 4 | 309 | - | - | |
Ahy11g2422 | 321 | MobiDBLite | consensus disorder prediction | 78 | 100 | - | - | |
Ahy11g2422 | 321 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RHF1A | 4 | 309 | - | - | |
Ahy11g2422 | 321 | SMART | ring_2 | 12 | 52 | IPR001841 | - | |
Ahy11g2422 | 321 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 68 | IPR013083 | - | |
Ahy11g2422 | 321 | MobiDBLite | consensus disorder prediction | 154 | 178 | - | - | |
Ahy11g2422 | 321 | SUPERFAMILY | RING/U-box | 7 | 59 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ahy11g2422 | Ahy-Chr11 | 139041514 | 139043883 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ahy11g2422 | 3 | 60 | C3H Transcription Factor Family | AT5G15790 | 43.103 | 1.00e-12 | 65.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ahy11g2422 | K19043 | - | gmx:100775754 | 323.939 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Ahy11g2422 | 11 | 139041514 | 139043883 | Ahy11g2422 | 11 | 139041514 | 139043883 | ECH |