Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2421 ATGATTCCATCCATGTCCATGGAGACTCACAGTTTCTCGCTTGGGGTCAGGGTCGCGCCATTTGTAAAGCGAACTGTCACCGTTTATCATGTGCCTCGCTTACGTAACCTTAATCGAACCTACCCTGCAGCTCAATGCATTCTTCCACAACCACCACTTATTAACCATTCTCCCACTTTGCGAGATATATGCCAGCCTCATGTCCCCACCCATATTTTGCAAAGGATGGAAGAGATTGGATATGTGATGCCTACAGATGTTCAGAGGGAGGCTTTGCCTCATCTTTTCTCCGGCCGTGACTGTATACTTCATGCTCAGACAGGTTCTGGGAAGACACTTACATACCTGCTTTTGATTTATTCCATCATCAACACTTTGAAATCTTCTGTGCAAGCGCTTGTTGTCGTCCCCACCCGTGAACTTGGCATGCAAGTCACTAAAGTTGCAAGGATGTTGGCAGCAAAGCCAACTGGAGTTGACGAGGAGCAGAAGTCGTGTACCGTCATGGCTCTCTTAGATGGAGGAACATTGAGAAGACACAAGAGTTGGTTAAAGGCAGAGCCTCCAACAGTAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACAAATTTTCTTGCTTGAATCTGTGCGGGTGCTAATTGTTGATGAGACAGTTTTTGCAAGTGCATCTATACCACAGCACAGACGATTTCTTCATGATTGTGTGCAGCAAAAATGGACAAAGAGTGATGTGATCCATATCCATGTCAGTCCAGTGGAGCCCATGCCATCTCGCCTGTGTCATAGATTTATAATATGCAATAACAAAAGGAAACTACAAACCCTATTATCCTTGATTCAGTCTGATGCACCTGAGTCTGGCATTATATTTGTTGGTGAACAGTCTGAGAAGTCCAAAAAGGCTGGAAATGCTCCATCAACAGACCTTGTCATTGACTTTTTGAAGACATCATATGAAGGGCCTTTAGATATTGTCCTTCTCGAGGATGACATGAATTTCAACTCACGCGCAGTTTCATTGTTGGAGGTTCGAAAAGGAGGTGGATATCTGCTTGTTGCAACAGATATAGCTGCTAGAGGAGTTGACCTTCCTGAAATGTCTCATATCTACAACTTTGACTTGCCAAGGACTGCCATTGATTATCTTCATCGAGCAGGCAGGACTTGTAGGAAACCTTTTTCTGACATGAAATGTACTGTTACCACCATTATAGTTCCCGAGGAGAGGTTTGTTCTGCAGAAATATGAAAATGAGTTGATGTTTAACTCTGAGGAGCTTATTCCATAA 1299 0.4373 MIPSMSMETHSFSLGVRVAPFVKRTVTVYHVPRLRNLNRTYPAAQCILPQPPLINHSPTLRDICQPHVPTHILQRMEEIGYVMPTDVQREALPHLFSGRDCILHAQTGSGKTLTYLLLIYSIINTLKSSVQALVVVPTRELGMQVTKVARMLAAKPTGVDEEQKSCTVMALLDGGTLRRHKSWLKAEPPTVVVATVGSLCQMLERQIFLLESVRVLIVDETVFASASIPQHRRFLHDCVQQKWTKSDVIHIHVSPVEPMPSRLCHRFIICNNKRKLQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTDLVIDFLKTSYEGPLDIVLLEDDMNFNSRAVSLLEVRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAIDYLHRAGRTCRKPFSDMKCTVTTIIVPEERFVLQKYENELMFNSEELIP* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2421 432 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 92 246 IPR014001 -
Ahy11g2421 432 SMART ultradead3 80 285 IPR014001 -
Ahy11g2421 432 CDD SF2_C_DEAD 265 394 - -
Ahy11g2421 432 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 52 220 - -
Ahy11g2421 432 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 221 431 - -
Ahy11g2421 432 Gene3D - 57 246 IPR027417 -
Ahy11g2421 432 Pfam DEAD/DEAH box helicase 85 221 IPR011545 GO:0003676|GO:0005524
Ahy11g2421 432 SMART helicmild6 312 396 IPR001650 -
Ahy11g2421 432 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 275 432 IPR001650 -
Ahy11g2421 432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 399 IPR027417 -
Ahy11g2421 432 CDD DEADc 72 239 - -
Ahy11g2421 432 Pfam Helicase conserved C-terminal domain 275 394 IPR001650 -
Ahy11g2421 432 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 52 220 - -
Ahy11g2421 432 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 221 431 - -
Ahy11g2421 432 Gene3D - 260 431 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2421 Ahy-Chr11 139038329 139041392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g2421 71 415 Eukaryotic Initiation Factors Gene Family AT3G13920 25.266 9.27e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2421 - - ahf:112763379 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2421 11 139038329 139041392 Ahy11g2421 11 139038329 139041392 ECH