Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2395 ATGATGCAGCCCGGACCTGGCATGGCTCCTCCACCCAGCATGGCCCAGCAGCCCAACCAGCAGTACCAGCAGCAGCAGCCATACATGATGATGCCTCCGCAGGCCCAGCCACCACAGATGTGGGCCCCCTCCGCCCAGGCTCCGACACAGTCCGTGCCTCCTTCCCAGCCCGTTCAGCCCGCCAGTGCCGATGAGGTCCGAACCCTGTGGATCGGTGATTTGCAGTACTGGATGGATGAGAACTACCTCTACACCTGTTTTGCTCACACTGGCGAGATGGCATCTGTTAAAGTAATTAGGAATAAGCAAACTAGTCAATCCGAGGGTTATGGGTTTATTGAGTTTACAAGCCGTGCTGCTGCTGAGAGAATACTACAAACATTCAATGGCACCATTATGCCAAATGGCGGGCAGAATTTCAGGTTGAACTGGGCAACCTTTAGCGCTGGTGAGAGGCGTCATGACGATAGTCCAGATTACACTATATTTGTTGGAGATTTGGCTGCAGATGTTACGGACTACCACCTTCAGGAGACATTTAGGGGTAGATACTCCTCGGTTAAGGGGGCTAAAGTTGTAATTGACAGGCTTACTGGGCGGACAAAGGGCTACGGTTTTGTTAGGTTTGCAGATGAGAGTGAGCAAGTTAGAGCTATGACGGAAATGCAGGGCGTTCTTTGTTCAACAAGACCCATGAGGATTGGACCAGCATCTAATAAAAACCCAACCACACAATCCAACAAAGCTTCATACCAGAATCCTCAAGGGGCACAGAACGAGAATGATCCAAATAATACAACTATTTTTGTTGGCAATTTGGATGCAAATGTTACAGATGATCACCTGCGACAAGTCTTTGGGCATTATGGAGAGTTAGTTCATGTGAAGATTCCATCCGGCAAGAGATGTGGGTTTGTGCAATTTGCTGACAGGAGTTGTGCTGAAGAGGCACTGAGAGTGTTGAATGGAACACTTTTAGGTGGCCAAAATGTTAGGCTTTCATGGGGACGGAGTCCTTCAAACAAACAGACTCAGGCCGACCCAAACCAGTGGAATGGTAGTGGATATTATGGATATGCACAGGGCTATGAAAATTATGGTTATGCTCCCGCTGGGCAGGACCCCAACATGTATGGAAGCTATCCAGGGTATGCAAATTACCAACCTCCTCAGCAGCAGCAGCAACAAATGGGATATAGTTAA 1203 0.4879 MMQPGPGMAPPPSMAQQPNQQYQQQQPYMMMPPQAQPPQMWAPSAQAPTQSVPPSQPVQPASADEVRTLWIGDLQYWMDENYLYTCFAHTGEMASVKVIRNKQTSQSEGYGFIEFTSRAAAERILQTFNGTIMPNGGQNFRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYHLQETFRGRYSSVKGAKVVIDRLTGRTKGYGFVRFADESEQVRAMTEMQGVLCSTRPMRIGPASNKNPTTQSNKASYQNPQGAQNENDPNNTTIFVGNLDANVTDDHLRQVFGHYGELVHVKIPSGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQADPNQWNGSGYYGYAQGYENYGYAPAGQDPNMYGSYPGYANYQPPQQQQQQMGYS* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2395 400 CDD RRM2_SECp43_like 159 238 - -
Ahy11g2395 400 SUPERFAMILY RNA-binding domain, RBD 252 362 IPR035979 GO:0003676
Ahy11g2395 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 147 IPR000504 GO:0003723
Ahy11g2395 400 SUPERFAMILY RNA-binding domain, RBD 152 251 IPR035979 GO:0003676
Ahy11g2395 400 SMART rrm1_1 68 143 IPR000504 GO:0003723
Ahy11g2395 400 SMART rrm1_1 267 334 IPR000504 GO:0003723
Ahy11g2395 400 SMART rrm1_1 161 235 IPR000504 GO:0003723
Ahy11g2395 400 MobiDBLite consensus disorder prediction 1 60 - -
Ahy11g2395 400 MobiDBLite consensus disorder prediction 234 267 - -
Ahy11g2395 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 338 IPR000504 GO:0003723
Ahy11g2395 400 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 18 396 - -
Ahy11g2395 400 Gene3D - 247 347 IPR012677 -
Ahy11g2395 400 SUPERFAMILY RNA-binding domain, RBD 28 148 IPR035979 GO:0003676
Ahy11g2395 400 MobiDBLite consensus disorder prediction 14 30 - -
Ahy11g2395 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 331 IPR000504 GO:0003723
Ahy11g2395 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 225 IPR000504 GO:0003723
Ahy11g2395 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 134 IPR000504 GO:0003723
Ahy11g2395 400 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 18 396 - -
Ahy11g2395 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 239 IPR000504 GO:0003723
Ahy11g2395 400 MobiDBLite consensus disorder prediction 230 267 - -
Ahy11g2395 400 MobiDBLite consensus disorder prediction 385 400 - -
Ahy11g2395 400 CDD RRM1_SECp43_like 68 148 - -
Ahy11g2395 400 MobiDBLite consensus disorder prediction 379 400 - -
Ahy11g2395 400 CDD RRM3_NGR1_NAM8_like 265 336 - -
Ahy11g2395 400 Gene3D - 152 246 IPR012677 -
Ahy11g2395 400 MobiDBLite consensus disorder prediction 40 60 - -
Ahy11g2395 400 Gene3D - 10 151 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2395 Ahy-Chr11 138588819 138592790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g2395 68 345 Eukaryotic Initiation Factors Gene Family AT4G34110 27.817 3.96e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2395 - - gmx:100814743 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2395 11 138588819 138592790 Ahy1g2501 1 103442915 103446856 hybridization
Ahy11g2395 11 138588819 138592790 Ahy14g0448 14 5893993 5897703 PCT
Ahy11g2395 11 138588819 138592790 Ahy4g0368 4 4624437 4628314 PCT