Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2238 ATGAAACCCTCAATCGATGACGTCAACTTACCCCCCGCCGCCGCCACCAACTCCACCGCACCATCCAAGCCTGTCTTCCTTACCAAAGCCCAGCGCGAGCAATTGGCACTCCAGCGCCGTCAGGAGGAAATCGCCAACCAGAAGCGCCGCCAAGAGCAGCTCCTTTCTCGTAATCGACCTTCCTCCGATTCCGCGGCCGATTCCAAACCCTCCGCTGACTCCGACCGGCGTGACCGCGACCGTGACAGGGACAGGGATAGGGATAGGGACAGGGACAGAGACCGCGAACGAGAACGAGAACGGGAACGGGAACGGGAGCGCGATAGGGCACGCGATCGGGACCGCGAGGCGGAGCGACGGAACCGAGAGAGGGAGCGCGAAGAGGAAAGTAGGGCTCGGGAACGAGCACGGTTGGAGAAATTGGCGGAGCGGGAGCGCGAGAAGGAGCTCGAATCCATCAAAGAACAGTACCTTGGTTCGAAGAAGCCGAAGAAGCGCGTGATCAAGCCCAGCGAGAAGTTCCGTTTCTCCTTCGACTGGGAGAACACCGAGGACACATCTCGCGACATGAACTCCCTCTATCAGAACCCTCACGAGGCTCAGCTCCTCTTCGGCCGCGGCTTCCGCGCCGGCATGGACCGCCGCGAGCAGAAGAAGCTCGCCGCCAAGAACGAGAAGGAGATGCGCGAGCAGATCCGTCGCAAGGACGGCGTCGAGGAGAAGCCCGAGGAGGCCGATGCCCAGCGCCGCAAGGAGGCTGCTGCCGACCTCTACGACACCTTCGACATGAGGGTTGACCGCCATTGGAGCGAGAAAAAGCTTGAGGAAATGACGGAGAGGGATTGGCGTATCTTCAGGGAGGACTACAACATCTCCTACAAGGGTTCCAAGATACCTCGCCCCATGCGGAGCTGGGTAGAGAGCAAGCTCAGCAATGAGCTTCTGAAGGCGGTGGAGAAGGCTGGGTACAAGACCCCTTCCCCCATTCAGATGGCTGCAATTCCCCTTGGCTTGCAGCAGCGTGATGTCATTGGCATTGCCGAGACCGGTTCCGGTAAGACTGCTGCTTTTGTTCTTCCCATGTTGAGTTACATTACTAGGCTTCCCCCCATGAGTGAGGAGAATGAGGCTGAGGGTCCCTATGCTGTTGTTATGGCTCCGACTCGCGAGCTTGCCCAGCAGATTGAGGATGAGACTGTTAAGTTTGCTCAATATCTGGGTATTAAGGTTGTCTCCATTGTTGGTGGTCAGTCCATTGAGGAACAAGGGTTTAAGATTAGGCAAGGCTGTGAGATTGTCATTGCTACTCCAGGTCGTTTGATAGATTGTTTAGAGCGGCGATATGCTGTGCTGAACCAATGCAATTATGTTGTTCTTGATGAGGCGGATCGCATGATTGATATGGGTTTTGAGCCACAGGTGATGGGTGTCTTGGATGCCATGCCTTCCAGCAACTTGAAACCTGAGAATGAAGATGAGGAGCTTGATGAGAAGAAGATTTATAGGACCACTTATATGTTCAGTGCCACCATGCCTCCGGCAGTGGAGAGGCTTGCTAGGAAGTATCTGAGGAATCCTGTTGTGGTGACCATTGGCACTGCCGGAAAGGCAACTGACTTGATCAGCCAACATGTGATAATGATGAAGGAATCTGAGAAATTCCATAAGCTTCAAAGGTTGCTTGATGAGCTTAATGACAAGACGGCAATTGTGTTTGTTAACACCAAGAAGAATGCGGATATGGTTGCCAAGAATTTGGACAAGGAAGGGTATCGTGTGACTACATTGCATGGAGGGAAGTCGCAGGAGCAGAGAGAGATTAGTCTAGAAGGGTTTAGGACCAAGAGATACAATGTTCTTGTTGCCACAGATGTTGCTGGACGTGGTATTGACATACCCGATGTGGCTCATGTGATAAACTATGATATGCCTGGGAACATTGAAATGTACACGCACCGCATTGGGCGTACTGGTCGTGCAGGAAAGACTGGTGTGGCAACAACATTCCTCACTCTTCAGGACACTGATGTCTTCTATGACCTCAAACAGATGCTTATTCAAAGCAACAGCCCTGTTCCACCTGAATTGGCAAGGCACGAAGCCTCCAAGTTCAAGCCAGGGACTATTCCCGACAGACCACCTAGACGAAATGACACTGTGTTTGCACATTAG 2172 0.5322 MKPSIDDVNLPPAAATNSTAPSKPVFLTKAQREQLALQRRQEEIANQKRRQEQLLSRNRPSSDSAADSKPSADSDRRDRDRDRDRDRDRDRDRDRERERERERERERDRARDRDREAERRNREREREEESRARERARLEKLAEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRRKDGVEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWVESKLSNELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFHKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2238 723 Gene3D - 264 533 IPR027417 -
Ahy11g2238 723 MobiDBLite consensus disorder prediction 69 162 - -
Ahy11g2238 723 SMART ultradead3 322 544 IPR014001 -
Ahy11g2238 723 Coils Coil 215 241 - -
Ahy11g2238 723 Pfam Helicase conserved C-terminal domain 553 661 IPR001650 -
Ahy11g2238 723 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 458 466 IPR000629 -
Ahy11g2238 723 MobiDBLite consensus disorder prediction 1 166 - -
Ahy11g2238 723 Coils Coil 27 57 - -
Ahy11g2238 723 Pfam DEAD/DEAH box helicase 328 518 IPR011545 GO:0003676|GO:0005524
Ahy11g2238 723 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 682 IPR027417 -
Ahy11g2238 723 PANTHER - 85 716 - -
Ahy11g2238 723 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 334 529 IPR014001 -
Ahy11g2238 723 SMART helicmild6 580 661 IPR001650 -
Ahy11g2238 723 MobiDBLite consensus disorder prediction 698 723 - -
Ahy11g2238 723 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 303 331 IPR014014 GO:0003724
Ahy11g2238 723 Gene3D - 534 721 IPR027417 -
Ahy11g2238 723 CDD DEADc_DDX23 314 530 - -
Ahy11g2238 723 MobiDBLite consensus disorder prediction 35 56 - -
Ahy11g2238 723 MobiDBLite consensus disorder prediction 215 251 - -
Ahy11g2238 723 Coils Coil 93 151 - -
Ahy11g2238 723 CDD SF2_C_DEAD 541 670 - -
Ahy11g2238 723 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 556 700 IPR001650 -
Ahy11g2238 723 MobiDBLite consensus disorder prediction 11 25 - -
Ahy11g2238 723 MobiDBLite consensus disorder prediction 691 723 - -
Ahy11g2238 723 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 85 716 - -
Ahy11g2238 723 Coils Coil 547 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2238 Ahy-Chr11 135438560 135442079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g2238 301 683 Eukaryotic Initiation Factors Gene Family AT3G19760 31.510 1.20e-60 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2238 K12858 - gmx:100799264 1129.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2238 11 135438560 135442079 Ahy1g2609 1 104989629 104992339 hybridization