Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2181 ATGGCTTGTTTGAAACCTGATGAGTTGGAGCTTGTTGGTAGAGGAGAGCAAGGTTCTCATCATGCTATGGAAAGAATTGGTGATGCTAATGTTGGTTCCAACAACAACAACATGGCTGATGATGCTTCTATGATGCATTTTCCTGCTAACTGGCCAATGCCAGCATCTGGACTGAATGCATCAGCTCCAACTCATTTTACCATCTTATTCAATGGGAACACTTTTGTCTATGATGGAATTAATACAGAGAAGGTGCAAGAGATAATGCTTATTGCTGCTGCATATGCCAAGTCTGCTGAAGTGAAAATTGGGACACAATCTTCATTCACTCCACTCATTCCCACTTCCACAAGTTCTTCTCCTGCACAAAGAAATTCCAACAACTTGCCTTCAAAACAATCTGTGTGCTTTCCTGCAGAAAAGAGTTCCATTTGCAGGCTGCAAGAATTTCCGTTAGCACGTAGACAATCTCTTCAGAGGTTTCTTGAGAAGCGACGAGTCAGGTTGTTTAGCAAAGCCCCTTATGGTTTCTCAAAAAACATGGCTGGCCTCTATGATGACAATAGTCCAGGGAACATAGAGAACAGCTTTTATGATGACAATAGTCCACAAGATTTTGCTTCTTAA 627 0.4163 MACLKPDELELVGRGEQGSHHAMERIGDANVGSNNNNMADDASMMHFPANWPMPASGLNASAPTHFTILFNGNTFVYDGINTEKVQEIMLIAAAYAKSAEVKIGTQSSFTPLIPTSTSSSPAQRNSNNLPSKQSVCFPAEKSSICRLQEFPLARRQSLQRFLEKRRVRLFSKAPYGFSKNMAGLYDDNSPGNIENSFYDDNSPQDFAS* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2181 208 ProSiteProfiles Tify domain profile. 59 94 IPR010399 -
Ahy11g2181 208 SMART tify_2 59 94 IPR010399 -
Ahy11g2181 208 MobiDBLite consensus disorder prediction 112 131 - -
Ahy11g2181 208 PANTHER DIVERGENT CCT MOTIF PROTEIN 18 183 - -
Ahy11g2181 208 Pfam tify domain 61 93 IPR010399 -
Ahy11g2181 208 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 18 183 IPR040390 -
Ahy11g2181 208 Pfam Jas motif 151 175 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2181 Ahy-Chr11 134475270 134478820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g2181 63 175 Tify Gene Family AT5G20900 43.860 2.02e-21 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Ahy11g2181 tify 3.10E-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2181 K13464 - gmx:100306655 141.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2181 11 134475270 134478820 Ahy1g2652 1 105541755 105545282 hybridization
Ahy11g2181 11 134475270 134478820 Ahy13g2438 13 56411451 56416176 PCT
Ahy11g2181 11 134475270 134478820 Ahy3g2190 3 69635295 69640033 PCT
Ahy13g2438 13 56411451 56416176 Ahy11g2181 11 134475270 134478820 PCT
Ahy3g2190 3 69635295 69640033 Ahy11g2181 11 134475270 134478820 PCT