Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2163 ATGGAGGTAGAGGATGATGACTGGGACTTGACCGCAGAAGAACTCGATTCTCTTGAACGCGACGCTTTCCAGAAAATTGCTCAACTTCGCGACTCTTCTACCCCTCCTTCTTCTCAACAACTCAATCTGCACCAACACCAACACCAACAACACCATTTTCCAAAACCACCTTCTGCCAACCATTCCCAACCCTTCCCACCAAACCCCATTTCCGATTCCCGTCCTCAAAGGGTGGACGCTTTGCCTCAAGGAGGTAGAGCATTACACCCCTCATTGAAACCAGGGACAAAAAAGGATGAACCTTCTAAAGAACTGCCGAAGTTTTCTGTCAAATTTTTTCTTCATTCCAGTGGGCATGTTGCAGCGAAATTCCAATATGACCAGGTAATAATTTCTGCTTTTCGAAGAATCCCTAAAGCTTCTTGGAATGCAAAAGAAAGGTTATGGATGTTCCCACTTTCTTCCTTGTCAGACGCAGAGAAGGTTCTAGGAGAAATATCTAATTATAAAGTTCAGGTGGAGAACTTAGATCCTTTAGTGCACCGTGCCATTGTTTCTGCATCCGCTGTTCCAGATCTTCGAGATCGTTACGACAAGATCCCTAATTACATTGAATCAAAGCTTTTACCATTTCAGAGAGAAGGTGTAAGGTTTATTCTACAACATGGAGGACGTGCTCTTTTGGCAGATGAAATGGGACTAGGAAAAACTTTGCAGGCCATTGCTGTAGCTTCATGCATTCAGGAGTCATGGCCTGTTCTCATAGTTGCACCATCATCATTGCGCCTGCAATGGGCTTCTATCGTCTTACCTCAAAGTGGTGGATCAAATAGAGGAGGCTTCAATATAGTATCCCCAAGTGCCAAAAGCAACATTCGTTTGGATGGACTCTTCAACATTATCTCATATGATTTGGTGCCAAAGCTACAGAATATACTCACAACATTGGACTTTAAGGTTGTGATTGCAGATGAATCACACTATCTGAAGAATGCTCAGGCAAAGAGGACTACTGCAACTCTTCCAGTTATAAAGAAAGCTCAATACGCAATATTGCTTAGTGGAACTCCTGCTTTATCTCGACCAATAGAACTGTTCAAGCAGCTGGAAGCTTTGTATCCTGGCGTATATAAGAATGTTCATGAATATGGTAACCGATATTGCAAGGGTGGAGTTTTTGGAGTTTATCAAGGGGCAAGTAATCATGAAGAATTACACAATTTGATGAAGGCAACAGTGATGATACGAAGGCTTAAAAAAGATGTTCTTTCTCAACTTCCTGTAAAGCGTAGGCAACAAGTCTTCTTAGACTTAGCTGACAAGGACATGAAGCAAATTAACGCTTTATTCCGTGAGTTAGAGGTGGTAAAAGCCAAAATTAAGTCTGCCAAATCAAAAGATGAGGCTGAATCTCTTAAGTTTACTCAAAAGAATCTGATTAACAAGATATATACTGATTCTGCAGATGCCAAGATTCCTGCTGTTCTTGAATATCTTGGAACCGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACATCATCAGCCAATGATAGATGCAATACATGAGTTCCTTCTTAGGAAAAAAGTGGGTTGCATCCGGATTGATGAAGGTACACCCGCTGCATCAAGGCAACCATTGGTTACAGATTTCCAGGAAAAGGATTCTATCAAGGCAGCTGTGTTATCCATTAAAGCTGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTGCAGAACTATCCTGGACTCCAGGTGACCTAATTCAGGCCGAAGATCGTGCTCATCGAATTGGCCAGGTTTCTTCAGTAAATATATACTACTTGCTGGCAAATGATACGGTTGATGACATCATATGGGATGTGGTGCAATCCAAACTGGATAATTTGGGGCAGATGTTAGATGGCCATGAGAATACCTTAGCTGTGTCAAATAATCAACCATTGAGTAGCCCTGCAAAGCATACTACTGTTGAGCATAGCCCTTCAAAGCAGAGAACTCTTGACCAGTTTGTCAGAAGATGTGATAATGTGGATAGATCAGAACATCAGCCTGACCCAAAACGGCCCCGTCAGTCATGA 2094 0.4212 MEVEDDDWDLTAEELDSLERDAFQKIAQLRDSSTPPSSQQLNLHQHQHQQHHFPKPPSANHSQPFPPNPISDSRPQRVDALPQGGRALHPSLKPGTKKDEPSKELPKFSVKFFLHSSGHVAAKFQYDQVIISAFRRIPKASWNAKERLWMFPLSSLSDAEKVLGEISNYKVQVENLDPLVHRAIVSASAVPDLRDRYDKIPNYIESKLLPFQREGVRFILQHGGRALLADEMGLGKTLQAIAVASCIQESWPVLIVAPSSLRLQWASIVLPQSGGSNRGGFNIVSPSAKSNIRLDGLFNIISYDLVPKLQNILTTLDFKVVIADESHYLKNAQAKRTTATLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPGVYKNVHEYGNRYCKGGVFGVYQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLADKDMKQINALFRELEVVKAKIKSAKSKDEAESLKFTQKNLINKIYTDSADAKIPAVLEYLGTVIEAGCKFLIFAHHQPMIDAIHEFLLRKKVGCIRIDEGTPAASRQPLVTDFQEKDSIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLDNLGQMLDGHENTLAVSNNQPLSSPAKHTTVEHSPSKQRTLDQFVRRCDNVDRSEHQPDPKRPRQS* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2163 697 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 680 - -
Ahy11g2163 697 CDD DEXHc_HARP_SMARCAL1 208 417 - -
Ahy11g2163 697 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 495 646 IPR001650 -
Ahy11g2163 697 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 650 IPR027417 -
Ahy11g2163 697 MobiDBLite consensus disorder prediction 28 103 - -
Ahy11g2163 697 CDD SF2_C_SNF 489 614 - -
Ahy11g2163 697 Coils Coil 446 466 - -
Ahy11g2163 697 Pfam Helicase conserved C-terminal domain 494 603 IPR001650 -
Ahy11g2163 697 Gene3D - 184 442 IPR038718 -
Ahy11g2163 697 MobiDBLite consensus disorder prediction 28 57 - -
Ahy11g2163 697 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 4 680 IPR030101 GO:0006281|GO:0031297|GO:0036310
Ahy11g2163 697 SMART helicmild6 520 603 IPR001650 -
Ahy11g2163 697 ProSiteProfiles HARP domain profile. 101 178 IPR010003 -
Ahy11g2163 697 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 417 IPR027417 -
Ahy11g2163 697 MobiDBLite consensus disorder prediction 649 697 - -
Ahy11g2163 697 Pfam SNF2-related domain 226 474 IPR000330 GO:0005524|GO:0140658
Ahy11g2163 697 MobiDBLite consensus disorder prediction 663 697 - -
Ahy11g2163 697 Gene3D - 456 687 IPR027417 -
Ahy11g2163 697 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 217 375 IPR014001 -
Ahy11g2163 697 SMART ultradead3 204 383 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2163 Ahy-Chr11 134129036 134136931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g2163 493 643 RAD5 or RAD16-like Gene Family AT1G11100 33.113 4.66e-16 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy11g2163 SNF2_N 3.40E-23 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2163 K14440 - gmx:100778246 1094.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2163 11 134129036 134136931 Ahy1g2672 1 105785687 105793541 hybridization