Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2088 ATGGAAAACCTAGGCACCTCATCACACCAACCTCATCAAAAGAAAAACAAGAAAATGAAGAATAACAATAATAGGGTTTGTAATTCAAAAAAGAGTGAGAAGAAGTTTCTTGGGGTTAGACAAAGGCCTTCAGGAAGATGGATTGCAGAGATCAAAGACTCTTCACAGAAACTAAGGCTTTGGTTGGGAACTTATGATAGAGCTGAAGATGCTGCACTTGCTTATGACCATGCTGCAAGGCTTCTTAGAGGAAGAAATGCTAAGACTAATTTTCCAATCACCCATGGTGCTTGTAGCACCATTATTCTTGGCAAGAATCCAAGGGCTTATCAGCTCCTTAAGCAACATGCAGTTATGAAGAGCCACATGGCGCTTTCTTCGCACATGGTCAGGGATCCATTTGTCTCTTCTTCGCAATCATCCATTCTTGAGGATCATAATAATACTCTTGTTTTCCCCATCCCTGAAGAACAAGGTTCAGCTGATGGTAGTGGAGGATTTTCATTTGGATGTTGTAAGGTTTATTCTTCTGTTATTGTAGCTCCTTCTTTCAGTGCTTGA 561 0.4064 MENLGTSSHQPHQKKNKKMKNNNNRVCNSKKSEKKFLGVRQRPSGRWIAEIKDSSQKLRLWLGTYDRAEDAALAYDHAARLLRGRNAKTNFPITHGACSTIILGKNPRAYQLLKQHAVMKSHMALSSHMVRDPFVSSSQSSILEDHNNTLVFPIPEEQGSADGSGGFSFGCCKVYSSVIVAPSFSA* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2088 186 Gene3D AP2/ERF domain 34 94 IPR036955 GO:0003700|GO:0006355
Ahy11g2088 186 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
Ahy11g2088 186 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Ahy11g2088 186 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Ahy11g2088 186 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 186 - -
Ahy11g2088 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110-LIKE 12 186 - -
Ahy11g2088 186 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Ahy11g2088 186 CDD AP2 34 94 IPR001471 GO:0003700|GO:0006355
Ahy11g2088 186 MobiDBLite consensus disorder prediction 1 33 - -
Ahy11g2088 186 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Ahy11g2088 186 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2088 Ahy-Chr11 132126860 132127703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g2088 29 91 AP2-EREBP Transcription Factor Family AT5G19790 66.667 6.14e-26 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy11g2088 AP2 3.80E-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2088 K09286 - gmx:100800716 172.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2088 11 132126860 132127703 Ahy11g2088 11 132126860 132127703 ECH
Ahy11g2088 11 132126860 132127703 Ahy1g2835 1 108814474 108815254 hybridization