LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy11g2051	ATGGTAGACACCATAAAAAAGATAGTTCAAGGAGTTTTGGAAGAAGAACAATGTGAAGAAACTATGGAGCTGGAGCAACAAGCATCAGGTGGAGGATTACCACAAGAAACTATGGAGGATTCGATCATATTGAACCACACAAGCAACAAGGAAGTGGAAGCACCAAAACTAGAGTTGAAGACCCTACCTCCAAGCTTGAAGTATGCTTACTTGGGTGACAACAACACATACCCAGTAATCATCAATTCAAGCTTGAGTGAGGGGCAAGAAGAGGAGCTTATCCATGTGCTGAAGCAACACAAGGATGCTATAGGATGGACACTTGCAGATTTAAAAGAAGAATGGAAGAAAGATGTTGGCAGTGCTGCCAGCAATGCAACCATAGGAAATGACAGCATTTTTGCTTCTTGCTCTTTCTCTAGCCTTGGCCTTCACCCTTCCTTATGTGATGAACTGCGTGAAAAATTGGGATTCGAGGTTCCAACTCTGGTGCAAGCTCAAGCCATTCCTGTTATTCTCGCTGGCCGTCATGCACTTATTAATGCTGCCACAGGCACAGGGAAGACAGTTGCCTACTTAGCTCCACTTATTCATCAATTTTTCTCCATTTATTTGTCACAGACAGATAACAATTATGCATGCTTGTTACTGTCGTTGGTTCTTGTACCGACGCGTGAGCTATGTCTGCAGGTTTATGAAATTCTTCAAAAGCTATTGCATCGATTCCATTGGATTGTTCCCGGGTATGTTATGGGTGGTGAAAATAGATCAAAGGAGAAAGCTAGGCTACGCAAAGGCATATCAATTCTTATAGCAATACCTGGGCGCCTTTTAGATCATTTGAAGAATACACCATCATTCTTGTACACAAAATTGCGCTGGATAACTTTTGATGAAGCTGATAGGATTTTGGAATTAGGATTTGGACAAGATATACAGGAAATACTAGATCTTTTGGGTTCAAGAAAAGCAGCAAATGATTACAAGGAGAGTACAGTTCCAAGAAACTCTGAATTTCAAAGGCAGAATTTGCTTTTTTCTGCCACCTTTAATGAGAAAGTGAACCATCTTGCTAAAATAAGTTTACACAATCCAGTGATGATTGGTCTTGAGGGTAAAACAAGAAAACCAGTATCAACAATTGAAAGCATTGATCTTTCAGAGTCTGATGAAGATGACGAAGTCAAGTATTCCAGTAAAATGCCAACAGTTATAGATTATAAAATCCCCACACAGTTAATTCAGAGATACGTGAAAATGCCTTGTGGTTCTCGGCTTGTTGTTCTTCTTTCAATTCTAAAGCATCTTTTTGAAAGAGACACTTCACAAAAGGTTGTGGTATTCTTTTCGACATGTGATACGGTAGACTTTCACCATTCGCTACTAAGTGAGTTCCACTTCTCGACTGATCCTCAAACAAAAGAAAGGGTCATACAAATGTTTCTTGGATGCCAAACTTTTCGATTGCATGGTAATATGGAACATGAAGACCGGAGATCTACTTTTCAGGCTTTTAAAACTGAGAAATCTGCTTTGCTTTTGTCCACTGATGTTTCTGCTAGAGGCCTGGATTTTCCAACGGTTCGATGCATCATACAGTATGATTCTCCTGGGGAAGCTACTGAATATGTGCACAGAGTTGGTAGAACTGCTCGTCTGGGTGAAAGGGGAGAGTCCTTGTTATTTCTGCAACTAGTTGAAATAGATTATTTACAGGACTTGGAGAAACATGGTGTTTCACTAGCGGAGTATCCTCTTCTCAAAGTGTTGGATAATTTTACATTACACGGACAGAACAAACACGTAAAGAAGTCTGTTTTCATCGACTTGCATCCTTGGGTCCTTTGTCTCCAGAAGGCACTTGAATCATTCATCATTTCCAAGCCCAAGATGGATGAACTTGCTAGGAAGGGATTTTGCTCTTGGGTCCGTGCTTACACAGCACATCGTGGTGAGCTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCACGTGGCCAAAAGCTTTGCGTTGAAACAACAACCGTCCTTAGTTGGACAATCCTTCCAAAAGCAAAATAAGAAGAGAAAGAGATTTGAGAAGAAAAGTGGGCTATCGAAAAAGAGAAAAGTTGCTAGAGTGACTTAA	2133	0.4046	MVDTIKKIVQGVLEEEQCEETMELEQQASGGGLPQETMEDSIILNHTSNKEVEAPKLELKTLPPSLKYAYLGDNNTYPVIINSSLSEGQEEELIHVLKQHKDAIGWTLADLKEEWKKDVGSAASNATIGNDSIFASCSFSSLGLHPSLCDELREKLGFEVPTLVQAQAIPVILAGRHALINAATGTGKTVAYLAPLIHQFFSIYLSQTDNNYACLLLSLVLVPTRELCLQVYEILQKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILIAIPGRLLDHLKNTPSFLYTKLRWITFDEADRILELGFGQDIQEILDLLGSRKAANDYKESTVPRNSEFQRQNLLFSATFNEKVNHLAKISLHNPVMIGLEGKTRKPVSTIESIDLSESDEDDEVKYSSKMPTVIDYKIPTQLIQRYVKMPCGSRLVVLLSILKHLFERDTSQKVVVFFSTCDTVDFHHSLLSEFHFSTDPQTKERVIQMFLGCQTFRLHGNMEHEDRRSTFQAFKTEKSALLLSTDVSARGLDFPTVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQLVEIDYLQDLEKHGVSLAEYPLLKVLDNFTLHGQNKHVKKSVFIDLHPWVLCLQKALESFIISKPKMDELARKGFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQNKKRKRFEKKSGLSKKRKVARVT*	711

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy11g2051	710	Pfam	DEAD/DEAH box helicase	163	356	IPR011545	GO:0003676\|GO:0005524
	Ahy11g2051	710	Gene3D	-	424	706	IPR027417	-
	Ahy11g2051	710	CDD	SF2_C_DEAD	413	563	-	-
	Ahy11g2051	710	SMART	helicmild6	472	554	IPR001650	-
	Ahy11g2051	710	Gene3D	-	107	371	IPR027417	-
	Ahy11g2051	710	SMART	DUF4217_3	616	681	IPR025313	-
	Ahy11g2051	710	PANTHER	RNA HELICASE	111	708	-	-
	Ahy11g2051	710	Pfam	Domain of unknown function (DUF4217)	618	678	IPR025313	-
	Ahy11g2051	710	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	129	368	IPR027417	-
	Ahy11g2051	710	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	432	601	IPR001650	-
	Ahy11g2051	710	SMART	ultradead3	157	384	IPR014001	-
	Ahy11g2051	710	Pfam	Helicase conserved C-terminal domain	431	554	IPR001650	-
	Ahy11g2051	710	MobiDBLite	consensus disorder prediction	686	710	-	-
	Ahy11g2051	710	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	291	569	IPR027417	-
	Ahy11g2051	710	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	169	368	IPR014001	-
	Ahy11g2051	710	MobiDBLite	consensus disorder prediction	682	710	-	-
	Ahy11g2051	710	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	137	166	IPR014014	GO:0003724
	Ahy11g2051	710	PANTHER	ATP-DEPENDENT RNA HELICASE DDX31-RELATED	111	708	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy11g2051	Ahy-Chr11	130232961	130261169	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy11g2051	130	586	Eukaryotic Initiation Factors Gene Family	AT3G19760	23.478	1.37e-30	123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy11g2051	K14806		-	gmx:100805157	900.968