Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2048 ATGGGAAGGGGAAGAGTGCAGTTGAAGAGGATCGAGAACAAGATTAATAGGCAAGTCACGTTCTCAAAGAGAAGATCTGGTTTGCTGAAGAAGGCAAACGAAATCTCAGTGCTATGCGATGCCGAAGTCGCACTCATCGTCTTCTCCACCAAAGGCAAGCTCTTCGATCCCTGTATGGAAAGGATTCTTGAACGGTATGAGAGGTACTCATATGCGGAGAAGCAACTCATTTCAAATGATCAGCAGCCGCCAAATGAAAACTGGATACTAGAACACGCAAAGCTCAAGGCTAGGGTGGAAGTTCTACACAGAAATCAAAGGAATTTTATGGGGGAAGGTCTCGATACCCTAAGTCTGAAAGAACTTCAGAATTTGGAACACCAACTTGAATCCGCTCTCAAGCACATTAGATCACGAAAGAACCAAGTCATGTATGAATCTATTTCAGAGCTTCAGAAAAAGGATAAGGCACTCCAGGAACAAAACAACGTGCTCGCCAAGAAGATAAAGGAAAAAGAGAAGGCACTGGCCCAGACTCAAACTCAAGAGGAGCAACTTGGCCTGCAAACTACTGGTGATGTGCCCTCTCTCCTTATAACCGAACCGTTGGAGTCCTTCAATAATATTGGAGGCAGTAGTACCCCTCAAGCACCTGGAGGTAGTGATGGATTATTATTAGGAGATAATGAAGAAAGTACTACACCAACTCAACCTAATAATAATAATAACCTTCTTCCTCCTTGGATGATTCGCCCTACAATAAATGAATAG 771 0.4345 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIVFSTKGKLFDPCMERILERYERYSYAEKQLISNDQQPPNENWILEHAKLKARVEVLHRNQRNFMGEGLDTLSLKELQNLEHQLESALKHIRSRKNQVMYESISELQKKDKALQEQNNVLAKKIKEKEKALAQTQTQEEQLGLQTTGDVPSLLITEPLESFNNIGGSSTPQAPGGSDGLLLGDNEESTTPTQPNNNNNLLPPWMIRPTINE* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2048 256 Coils Coil 148 189 - -
Ahy11g2048 256 Coils Coil 119 142 - -
Ahy11g2048 256 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Ahy11g2048 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Ahy11g2048 256 MobiDBLite consensus disorder prediction 227 248 - -
Ahy11g2048 256 ProSiteProfiles MADS-box domain profile. 1 56 IPR002100 GO:0003677|GO:0046983
Ahy11g2048 256 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy11g2048 256 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Ahy11g2048 256 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 184 - -
Ahy11g2048 256 Pfam K-box region 81 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy11g2048 256 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy11g2048 256 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Ahy11g2048 256 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy11g2048 256 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy11g2048 256 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy11g2048 256 MobiDBLite consensus disorder prediction 205 219 - -
Ahy11g2048 256 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 184 - -
Ahy11g2048 256 MobiDBLite consensus disorder prediction 205 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2048 Ahy-Chr11 130202440 130208756 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g2048 1 211 MADS-box Gene Family AT1G26310 60.444 6.29e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy11g2048 K-box 5.60E-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2048 K09264 - gmx:100784742 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2048 11 130202440 130208756 Ahy20g2407 20 128895882 128903684 ECH
Ahy14g3055 14 139331702 139344462 Ahy11g2048 11 130202440 130208756 ECH
Ahy11g2048 11 130202440 130208756 Ahy11g2048 11 130202440 130208756 ECH
Ahy11g2048 11 130202440 130208756 Ahy1g2876 1 109431330 109437260 hybridization
Ahy11g2048 11 130202440 130208756 Ahy20g2409 20 128926456 128935336 PCT
Ahy11g2048 11 130202440 130208756 Ahy10g1921 10 104624010 104632518 PCT
Ahy20g2409 20 128926456 128935336 Ahy11g2048 11 130202440 130208756 PCT
Ahy10g1921 10 104624010 104632518 Ahy11g2048 11 130202440 130208756 PCT