Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2047 ATGGGAAGGGGTAAGGTTGAGTTGAAGAGGATAGAGAACAAGATCAACAGGCAAGTTACATTTGCAAAGAGGAGAAATGGTTTGCTCAAGAAGGCTTATGAACTCTCAGTTCTTTGTGATGCCGAAGTTGCCCTCATCATCTTCTCTAATCGCGGCAAACTCTACGAGTTTAGCAGCACTTCCAGCATGATGAGAACTCTGGAGAAGTATCACAAGTATAGTTACAGTGCTCTCGAGTCTGGTCGACCAATCAGTGACACGCAGACAAATTACGAGGATTATAAGAGACTAAAAGACAATGTAGAAGCTCTCCAACGTTCTCAGAGGAACCTACTGGGGGAAGATCTTGCTCAAATGAATACAACTGAGCTGGACCAGCTTGAGAATCAACTTGAGGTAGCACTCAAGAATATTAGGTCAACTAAGACTCAGTTTATGCTTGACCAACTTGCTGATCTTCAGAACCGGGAAATGGCGCTTGTTGAAACAAATAATGTGCTAAGGAGTAAGATGAAACAGTTAGAAGAACTGAATAATCACTCATCAGAAGTGGCTTTGGAAGACGTGGGCCCCACCATTCACTACAACCGCTTTCCTTCTCAATCAGATCACCCATTTTTCCAACCTGTTCTAGGAGTTAATTCCAACTTGCAAATTGGATACAATCAGAGCATTCATCATGATGTGAACGTTGGAGCTTCATCCTTAACTATGCAGGGATTCGTCTCTGGGTGGATGCTTTGA 744 0.4301 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSMMRTLEKYHKYSYSALESGRPISDTQTNYEDYKRLKDNVEALQRSQRNLLGEDLAQMNTTELDQLENQLEVALKNIRSTKTQFMLDQLADLQNREMALVETNNVLRSKMKQLEELNNHSSEVALEDVGPTIHYNRFPSQSDHPFFQPVLGVNSNLQIGYNQSIHHDVNVGASSLTMQGFVSGWML* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2047 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy11g2047 247 Coils Coil 117 144 - -
Ahy11g2047 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Ahy11g2047 247 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Ahy11g2047 247 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Ahy11g2047 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy11g2047 247 Coils Coil 84 114 - -
Ahy11g2047 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy11g2047 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy11g2047 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy11g2047 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ahy11g2047 247 Coils Coil 160 180 - -
Ahy11g2047 247 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Ahy11g2047 247 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy11g2047 247 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 229 - -
Ahy11g2047 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy11g2047 247 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2047 Ahy-Chr11 130139630 130147632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g2047 1 247 MADS-box Gene Family AT5G15800 51.136 2.75e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy11g2047 K-box 2.00E-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2047 K09264 - gmx:100804810 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2047 11 130139630 130147632 Ahy20g2409 20 128926456 128935336 ECH
Ahy14g3054 14 139311563 139316915 Ahy11g2047 11 130139630 130147632 ECH
Ahy11g2047 11 130139630 130147632 Ahy11g2047 11 130139630 130147632 ECH
Ahy11g2047 11 130139630 130147632 Ahy1g2878 1 109474423 109482226 hybridization