Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g2017 ATGGCTTTCTTTGGTCGAATTGGGAATTTACTCAGAAATGCTGCAAACAAGCAGATCAGTTCAGAATTGCTCTCATCCCCATCTATTTTCCAGGCAATACGGTGCATGTCATCTGCTCCAAGCTCAAAACTGTTCATTGGAGGTGTTTCATATTCTACTGATGAGCAAGGTTTGAGGGAGGCATTTTCAAGATATGGAGAAGTTGTTGATGCAAGGATAATTGTGGATCGTGATAGTGGTAGATCCAGGGGATTTGGTTTTGTTACTTTCAGTTCAGCTGAGGAGGCATCAAGTGCTATTCAAGCCTTGGATGGACAGGATCTTCATGGTCGCCGGATTAGGGTAAATTATGCTAATGAAAGGCCCCGTGGATTCGGCGGTGGAGGTGGTGGTTTTGGTGGTTCTTATGGCAATGCACCATATGGTGCTGGTGCTGGCTATGGAAGTGCTTACGGTAACTCTCCTTATGATGGTGCTCCAGGTGGTGGTGGTGGTGGCGGTTATGGTGGCAATGCTGCTGGAGGTTACGGTGGAGGCGGCTATGGATCTGGTGGCAATTATGGTCGCAGTGGCTATGACAATAACTATTCCACTCCTGACAGTTATGGAAGTAGCAGTGCTGGTGGCAGTGGAGATTATGGTGGTAACAGTGGGAATTTTGGTGTTGCTGGTGGTGGTGGAGGAAGTGATAGCTATGGCAGTGCTCCTGGTTTTGATGCTGCTGCTGGTGTAGGTAGTCATGAAACATCTGCTGGTTTTGGTGGCAGTGATAATTATGCCAGTGCTGGTGGATTTGATGGAAGTGAGGGATCCGGATATGGCAGTAGTGACCAACTGGATAACAAAGAAACCAGCATTGAAGGCGACGATATGGACTTAGTAGAAGGAAATTACAAAGATGACAATGATGATACCGATGACTTTGCCAAAAGGGCTTGA 939 0.4686 MAFFGRIGNLLRNAANKQISSELLSSPSIFQAIRCMSSAPSSKLFIGGVSYSTDEQGLREAFSRYGEVVDARIIVDRDSGRSRGFGFVTFSSAEEASSAIQALDGQDLHGRRIRVNYANERPRGFGGGGGGFGGSYGNAPYGAGAGYGSAYGNSPYDGAPGGGGGGGYGGNAAGGYGGGGYGSGGNYGRSGYDNNYSTPDSYGSSSAGGSGDYGGNSGNFGVAGGGGGSDSYGSAPGFDAAAGVGSHETSAGFGGSDNYASAGGFDGSEGSGYGSSDQLDNKETSIEGDDMDLVEGNYKDDNDDTDDFAKRA* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g2017 312 CDD RRM_HP0827_like 43 119 - -
Ahy11g2017 312 PRINTS Eggshell protein signature 151 161 - -
Ahy11g2017 312 PRINTS Eggshell protein signature 178 196 - -
Ahy11g2017 312 PRINTS Eggshell protein signature 38 54 - -
Ahy11g2017 312 PRINTS Eggshell protein signature 126 141 - -
Ahy11g2017 312 MobiDBLite consensus disorder prediction 224 312 - -
Ahy11g2017 312 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Ahy11g2017 312 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 311 - -
Ahy11g2017 312 SUPERFAMILY RNA-binding domain, RBD 38 149 IPR035979 GO:0003676
Ahy11g2017 312 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Ahy11g2017 312 Gene3D - 14 137 IPR012677 -
Ahy11g2017 312 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 311 - -
Ahy11g2017 312 SMART rrm1_1 43 116 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g2017 Ahy-Chr11 128401648 128404456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g2017 44 122 Eukaryotic Initiation Factors Gene Family AT2G36660 31.646 6.11e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g2017 K12741 - gmx:100799124 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g2017 11 128401648 128404456 Ahy11g2017 11 128401648 128404456 ECH
Ahy11g2017 11 128401648 128404456 Ahy1g2899 1 109956889 109958792 hybridization