Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g1963 ATGTATCACTCTGCAGATTCAAAGCCTCCAGCTATGGATTCACCAGTGACCCTTTTGATTAAGCACCTTCTCGAAGCTATACCTCATGACACCCTTTCTCGCCTCTTATCTCATTATGGTGCTTCCTCTCTTCGTCCTTGCTCTACTGGAAGGTTGAGGAATTGTGCTTTCGTAGATTTCAAAAATGAAATGTCGGCATCTCAAGCACAACGTCAACTACATGGGTTGAGGCTTCTTGGTAAAGTCTTGTCAGCAGAGAGAGCTAATAATCCAATGGAAAGTGGCGAAAAAGGCAGTGTAGCTCAGCTGGGAAAGGAGTCTAAAGCGTCTGTGGTTAAAGATACAACTGTAACCAAAGCTATTGATGAAGATACAAAATCAGGATGTTTCCCTGTTGCTGAGCCAATTGCTGAAAGACTTGGTGTTGACTATCCATTTCCACCTCACCTTGAGTACGCTTACCCTCCGCCGGATGGAAATATATTGACCAACATTGTTAATGCTCTGATTGCTGTTCCCCGATTTTACACTCAGGTTCTACACTTAATGAACAAAATGAACATTCCAGCTCCATTTCGTATGGCATTGCCAACACCGCCATTACCTCCAGCCGTGCCAACACCACCACCTCCCCCTCCTCGGGTACCTTTGAAGCCTCAGTCTGCAGATCTGTCAAGTGGTGAATCAGAGATGGAATCTTCAGAAGAGGAGGTAGAGCCAACAACAGAAAAGCCTAAGAAGCGTGCCAGGCGTGAGACAATTATTGGCCCTGCCATTGATAAAGATGTAGCTCATGAGGATGTTGGAGTAAAACCAGCCACCTTAGTCCCAAAAGAAATCCCAGTAATCAAGAAGAACCCTGTTTTGCAGATCAATATTGCTCCCAAAGAAATTAAGGATGAGCGAAAAAATGATGACAGAAGCCAAGATTTACAGGAGCCAGAAAAAGAGAGTCCAGATCCACATAAATTCTTGACTCCAGAAGAATTAGAGAGTATTAACTATACCACTGGAAATCCGGCTCCTGTGTTGTATATTAAGAATTTGGCAAAAGATGTGGTTGGTGAAGATTTTTTTTTAATATTTGGGTGCTTGTTTGGAAGTATTGAGACTGCCAAGTCTTGCCTTCATGTAAAACTGATGCAGGAAGGAAGGATGAGAGGTCAAGCATTTTTAACATTCCCATCAATTGAGCTGGCTCATCAGGGACTGAATCTAGTGAATGGATATGTATTTAAAGGCAAGCCAATGATAATCCAGTTTGGTCGGAATCCTGGTGCCACTAAAGGAACTTGA 1296 0.4313 MYHSADSKPPAMDSPVTLLIKHLLEAIPHDTLSRLLSHYGASSLRPCSTGRLRNCAFVDFKNEMSASQAQRQLHGLRLLGKVLSAERANNPMESGEKGSVAQLGKESKASVVKDTTVTKAIDEDTKSGCFPVAEPIAERLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPAVPTPPPPPPRVPLKPQSADLSSGESEMESSEEEVEPTTEKPKKRARRETIIGPAIDKDVAHEDVGVKPATLVPKEIPVIKKNPVLQINIAPKEIKDERKNDDRSQDLQEPEKESPDPHKFLTPEELESINYTTGNPAPVLYIKNLAKDVVGEDFFLIFGCLFGSIETAKSCLHVKLMQEGRMRGQAFLTFPSIELAHQGLNLVNGYVFKGKPMIIQFGRNPGATKGT* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g1963 431 PANTHER UNCHARACTERIZED 10 429 IPR045164 -
Ahy11g1963 431 MobiDBLite consensus disorder prediction 294 328 - -
Ahy11g1963 431 CDD RRM1_RBM40_like 17 88 IPR034147 GO:0005515
Ahy11g1963 431 Gene3D - 337 430 IPR012677 -
Ahy11g1963 431 MobiDBLite consensus disorder prediction 295 327 - -
Ahy11g1963 431 CDD RRM2_RBM40_like 343 422 - -
Ahy11g1963 431 MobiDBLite consensus disorder prediction 201 258 - -
Ahy11g1963 431 PANTHER RNA-BINDING REGION-CONTAINING PROTEIN 3 10 429 - -
Ahy11g1963 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 90 IPR000504 GO:0003723
Ahy11g1963 431 MobiDBLite consensus disorder prediction 238 258 - -
Ahy11g1963 431 MobiDBLite consensus disorder prediction 201 218 - -
Ahy11g1963 431 SUPERFAMILY RNA-binding domain, RBD 16 425 IPR035979 GO:0003676
Ahy11g1963 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 342 424 IPR000504 GO:0003723
Ahy11g1963 431 SMART rrm1_1 17 86 IPR000504 GO:0003723
Ahy11g1963 431 SMART rrm1_1 343 420 IPR000504 GO:0003723
Ahy11g1963 431 Gene3D - 2 105 IPR012677 -
Ahy11g1963 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 344 416 IPR000504 GO:0003723
Ahy11g1963 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 83 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g1963 Ahy-Chr11 126172681 126179069 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g1963 344 420 Eukaryotic Initiation Factors Gene Family AT3G16380 33.766 1.80e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g1963 K13157 - gmx:100818499 582.022