Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g1962 ATGTATCACTCTGCAGATTCAAAGCCTCCAGCTATGGATTCACCAGTGACCCTTTTGATTAAGCACCTTCCCGAAGCTATACCTCATGACACCCTTTCTCGGCTCTTATCTCATTATGGTGCTTCCTCTCTTCGTCCGTGCTCTACTGGAAGGTTGAGGAATTGTGCTTTTGTAGATTTCAAAAATGAAATGTTGGCATCTCAAGCACAACGTCAACTACATGGGTTGAGGCTTCTTGGTAAAGTCTTGTCAGCAGAGAGAGCTAATAATCCAATGGAAAGTGGCGAAAAAGGCAGTGTAGCTCAGCTGGGAAAGGAGTCTAAAGCGTCTGTGGTTAAAGATACAACTGTAACCAAAGCTATTGATGGAGATACAAAATCAGGATGTTTCCCTGTTGCCGAGCCAATTGCTGAAAGACTTGGTGTTGACTATCCATTTCCACCTCACCTTGAGTATGCTTACCCTCCGCCGGATGGAAATATATTGACCAACATTGTTAATGCTCTGATTGCTGTTCCCCGATTTTACACTCAGGTTCTACACTTAATGAACAAAATGAACATTCCAGCTCCATTTCGTATGGCATTGCCAACACCGCCATTACCTCCAGTCGTGCCAACACCACCACCTCCCCCTCCTCCGGTACCTTTGAAGCCTCAGTCTGCAGATCTGTCAAGTGGTGAATCAGAGATGGAATCTTCAGAAGAGGAGGTAGAGCCAACAACAGAAAAGCCTAATAAGCGTGCCAGGCATGAGACAATTATTGGCCCTGCCATTGATAAAGATGTAGCTCATGAGGATGTTGGAGTAAAACCAGCCACCTTAGTCCCAAAAGAAATCCCATTAATCAAGAAGAAGAACCCTGTTTTGCAGATCAATATTGCTCCCAAAGAAATTAAGGATGAGCGTAAAAATGATGACAGAAGCCAAGATTTACAGGAGCCAGAAAAAGATAGTCCAGATCTACATAAATTCTTGACTCCAGAAGAATTAGAGAGTGGAAAATTGCCTCCTGAAGAAATATTATCTCTTCCAATGTTTAAGAACTATACCACTGGAAATCCGGCTCCTGTGTTGTATATTAAGAATTTGGCAAAAGATGTGGTTGGTGAAGATTTTTTTTTAATATTCGGGTGCTTGTTTGGAAGTATTGAGACTGCCAAGTCTTGCCTTCATGTAAAACTGATGCAGGAAGGAAGGATGAGAGGTCAAGCATTTTTAACATTCCCATCAATTGAGCTGGCTCATCAGGGACTGAATCTAGTGAATGGATATGTATTTAAAGGCAAGCCAATGATAATCCAGTTTGGTCGGAATCCTGGTGCCACTAAAGGAACTTGA 1341 0.4258 MYHSADSKPPAMDSPVTLLIKHLPEAIPHDTLSRLLSHYGASSLRPCSTGRLRNCAFVDFKNEMLASQAQRQLHGLRLLGKVLSAERANNPMESGEKGSVAQLGKESKASVVKDTTVTKAIDGDTKSGCFPVAEPIAERLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPVVPTPPPPPPPVPLKPQSADLSSGESEMESSEEEVEPTTEKPNKRARHETIIGPAIDKDVAHEDVGVKPATLVPKEIPLIKKKNPVLQINIAPKEIKDERKNDDRSQDLQEPEKDSPDLHKFLTPEELESGKLPPEEILSLPMFKNYTTGNPAPVLYIKNLAKDVVGEDFFLIFGCLFGSIETAKSCLHVKLMQEGRMRGQAFLTFPSIELAHQGLNLVNGYVFKGKPMIIQFGRNPGATKGT* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g1962 446 PANTHER UNCHARACTERIZED 10 444 IPR045164 -
Ahy11g1962 446 Gene3D - 2 105 IPR012677 -
Ahy11g1962 446 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 357 439 IPR000504 GO:0003723
Ahy11g1962 446 CDD RRM1_RBM40_like 17 88 IPR034147 GO:0005515
Ahy11g1962 446 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 90 IPR000504 GO:0003723
Ahy11g1962 446 SMART rrm1_1 358 435 IPR000504 GO:0003723
Ahy11g1962 446 SMART rrm1_1 17 86 IPR000504 GO:0003723
Ahy11g1962 446 CDD RRM2_RBM40_like 358 437 - -
Ahy11g1962 446 PANTHER RNA-BINDING REGION-CONTAINING PROTEIN 3 10 444 - -
Ahy11g1962 446 SUPERFAMILY RNA-binding domain, RBD 16 440 IPR035979 GO:0003676
Ahy11g1962 446 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 83 IPR000504 GO:0003723
Ahy11g1962 446 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 359 431 IPR000504 GO:0003723
Ahy11g1962 446 MobiDBLite consensus disorder prediction 203 219 - -
Ahy11g1962 446 MobiDBLite consensus disorder prediction 296 330 - -
Ahy11g1962 446 MobiDBLite consensus disorder prediction 203 253 - -
Ahy11g1962 446 MobiDBLite consensus disorder prediction 238 253 - -
Ahy11g1962 446 Gene3D - 352 445 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g1962 Ahy-Chr11 126068491 126076705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g1962 359 435 Eukaryotic Initiation Factors Gene Family AT3G16380 33.766 1.74e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g1962 K13157 - gmx:100818499 621.313