Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ahy11g1917 | ATGGGAAGAGTTAAATTAAAGATAAAGAAATTGGAGAGCACCAGCAATCGCCAAGTGACTTATTCAAAGCGGAAAAGCGGAATCTTGAAGAAAGCAAAGGAATTGTCAATACTATGTGATATAGATATTGTTCTTCTCATGTTTTCTCCAACAGGAAAGCCTACATTGCTACAAGGAGAGCGCAGTAATATTGAGGAAGTCATTGCAAAATTTGCTCAACTTACCCCACAAGAAAGGGCCAAAAGGAAATTGGAAAGTCTTGAAGCACTAAAGAAAACCTTCAAGAAATTGGATCACGATGTAAAAATACAAGATTTCTTGGGTTCAAGCAGTCAAACTGTGGAGGAATTAACTCATCAAGTAAGGCTTCTACAAACGCAGCTAACAGATGTACATCAGAGACTGAGCTATTGGAATAATATTGACAAGATCAATAGCATAGAACACCTTAGGCAAATGGAAGAATCACTCAGGGAATCAATTAATCGAGTGTGTTTACAGAAGGAAAATTTGGGAAAGCACCAAATAATGTCTCTTGAATGTGCCAATCAGTTACAGGATGGAATGACTTTACCCTTGATGATGGCTGGTCTGCAAGAAAACCAACCATTGTCTTGGCTTTTGAATAACGATAACCATCAGTTGATGTTGCCGAGCGAACCGAAATATCTGCAATATAGCGATAATACCAATAGAGAAGCTGAGCGCTCAACTGATGTTTCGCTCCCTGGATATTCCAGTTACATTGCCAATAATGGCAAACTTGACAGCTCTCCCCAAGTCAATACCATAGGTCAGGCAGGCAGTGGCTTGAATGAGTTGAACGGCACTGCTTGCTTAAATATACAACGTTGTGAGCAATTTGCATACCCTCCTCCTCCTCCTCCTCCTCCAGATAATGAGGAAGTGAAACATCGCACGACAATGTATAATGAGAATGGCCATGATAAACTAAATACTTCAGATTACCAAGTTCATAATGGCTTTGATTTGCCAAGATCACTGTTTGAAAACGGACACCAGTTCTGGAATTCTGCTCCTGGGCCCTGTGGGGTTGCCATGTATAACGAGAATGGCTACCATAGGTAA | 1089 | 0.4059 | MGRVKLKIKKLESTSNRQVTYSKRKSGILKKAKELSILCDIDIVLLMFSPTGKPTLLQGERSNIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVKIQDFLGSSSQTVEELTHQVRLLQTQLTDVHQRLSYWNNIDKINSIEHLRQMEESLRESINRVCLQKENLGKHQIMSLECANQLQDGMTLPLMMAGLQENQPLSWLLNNDNHQLMLPSEPKYLQYSDNTNREAERSTDVSLPGYSSYIANNGKLDSSPQVNTIGQAGSGLNELNGTACLNIQRCEQFAYPPPPPPPPDNEEVKHRTTMYNENGHDKLNTSDYQVHNGFDLPRSLFENGHQFWNSAPGPCGVAMYNENGYHR* | 363 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ahy11g1917 | 362 | CDD | MADS_SRF_like | 2 | 82 | IPR033897 | GO:0000981|GO:0000987|GO:0045944 | |
Ahy11g1917 | 362 | Coils | Coil | 77 | 97 | - | - | |
Ahy11g1917 | 362 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 | 1 | 361 | - | - | |
Ahy11g1917 | 362 | Coils | Coil | 114 | 134 | - | - | |
Ahy11g1917 | 362 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Ahy11g1917 | 362 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Ahy11g1917 | 362 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Ahy11g1917 | 362 | ProSiteProfiles | MADS-box domain profile. | 1 | 53 | IPR002100 | GO:0003677|GO:0046983 | |
Ahy11g1917 | 362 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 361 | - | - | |
Ahy11g1917 | 362 | Gene3D | - | 14 | 97 | IPR036879 | GO:0003677|GO:0046983 | |
Ahy11g1917 | 362 | SUPERFAMILY | SRF-like | 2 | 95 | IPR036879 | GO:0003677|GO:0046983 | |
Ahy11g1917 | 362 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Ahy11g1917 | 362 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 55 | IPR002100 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ahy11g1917 | Ahy-Chr11 | 124660076 | 124665185 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ahy11g1917 | 1 | 275 | Type I MADS-box Gene Family | AT2G03060 | 51.761 | 3.32e-87 | 266 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-M-type | Ahy11g1917 | SRF-TF | 2.90E-20 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ahy11g1917 | - | - | adu:107468091 | 724.161 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Ahy11g1917 | 11 | 124660076 | 124665185 | Ahy11g1917 | 11 | 124660076 | 124665185 | ECH | |
Ahy11g1917 | 11 | 124660076 | 124665185 | Ahy1g2953 | 1 | 111028114 | 111033176 | hybridization |