Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g1905 ATGAAAAAGCGGCAAGTGGTGATGGTGAGAAGAGATGCTTCTGCTTCGGATAATAATAACAATAATAATAATAATGTTGTTAAGTACGGAGAGTGTTTGAAGAATCATGCTGCCAATAGCGGAGGATATGCCGTGGATGGTTGCAGAGAGTTCATGGCTAGCGCCGCCGAGGGAACCACCGGGGCTCTTACCTGCGCCGCTTGTGGCTGCCATAGAAACTTCCATAGAAGAAAGGAACTAGCTGCACCATCCAGGAATGAGGACAATATCATGTGA 276 0.4674 MKKRQVVMVRRDASASDNNNNNNNNVVKYGECLKNHAANSGGYAVDGCREFMASAAEGTTGALTCAACGCHRNFHRRKELAAPSRNEDNIM* 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g1905 91 Pfam ZF-HD protein dimerisation region 27 79 IPR006456 -
Ahy11g1905 91 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 28 78 IPR006456 -
Ahy11g1905 91 MobiDBLite consensus disorder prediction 1 22 - -
Ahy11g1905 91 PANTHER MINI ZINC FINGER PROTEIN 2 20 80 - -
Ahy11g1905 91 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 20 80 - -
Ahy11g1905 91 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 29 78 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g1905 Ahy-Chr11 124245445 124246759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g1905 1 78 Zinc finger-homeobox gene family AT3G28917 59.036 1.81e-27 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Ahy11g1905 ZF-HD_dimer 2.40E-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g1905 - - adu:107468004 148.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1905 11 124245445 124246759 Ahy1g2964 1 111191547 111196793 hybridization