Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g1863 ATGGAAGGTAAAATGCTTATATTGGTGTTGTTATGTGTGTTCCCTACCTTAAATGCTAATATAGCTGAATTCGACCAAGTATGGATGGAGCGATCTATAGAAGCCAAAAAAGCAGCTCGCAAGGCTTTCAAGCCAAACCCTGAGGCAGTCACTGATGAATTCAATCAACATGTCAACAAGGTCCTTAAAGGTTCCAATAAAACGAGAAGGGGTTTATCCGCCAAATACAAAGGTCCATGTATGGCTACAAATCCCATTGACCGTTGCTGGAGATGTGACCCCAATTGGGAGAAAAACCGCCAACGGTTAGCAGACTGTGCTATTGGTTTCGGCCATGGCACGACGGGCGGCAAAGGTGGCAAAATCTACGTTGTCAATGATCCCTCAGATCATGATCTCCTCAACCCGAAACCTGGGACTCTGCGATTCGCAGTGATTCAGAAGGAGCCATTGTGGATCATTTTTAAACATGACATGACCATCAAGCTTAGTAGTGAGCTTATAGTCACTAGTCACAAGACCATAGATGCACGTGGTGCCAATGTTCACATTGCCAATGGTGCCCAAATGACGCTACAGTTTGTGAAGAACATAATCGTTCATGGACTGCATATTCACGGCATCAGGAAACATGCCGGCGGCATGATAAGAGACTCGGTCGACCACTTTGGAATCCGCACTGAGAGCGATGGGGATGGGCTTTCATTGTTTGGAGCTACAAACATTTGGATTGATCATGTTTCTCTGTCAAATTGTGATGATGGACTTATTGATGCCGTTGCTGGATCAACAGCTATTACCATATCCAACTGCCACATGACTCGCCATAATGATGTTATATTACTTGGTGCAAGTGATGCCTACTCAGGAGATCAAATCATGCAAGTAACATTGGCATTCAACCATTTTGGGCAAGGATTGGTGCAGAGGATGCCAAGGTGCAGATGGGGTTTCTTCCATATTGTCAACAATGACTACACTCACTGGCTTATGTATGCCGTCGGTGGTAGCCAACATCCCACCATCGTCAGCCAGGGCAACCGATTTATCGCACCTCCAAACCCAGCTGCAAAAGAGGTTACCAAGAGGGATTATGCTCCTCAAAGTGTGTGGAAAAATTGGAATTGGAGATCAGAGGGTGACTTAATGCTGAATGGAGCCTTCTTTGTTGAGTCTGGGACGAAGGTTACAAATTTTCCCAAATCAGGAGGTATTACTGCAAAGCCTGGGAGTTTCACATCAAGTCTCACTCGCTTTGCAGGTCCTCTCAAATGTGTAGTACACAAGCCATGCTGA 1296 0.4545 MEGKMLILVLLCVFPTLNANIAEFDQVWMERSIEAKKAARKAFKPNPEAVTDEFNQHVNKVLKGSNKTRRGLSAKYKGPCMATNPIDRCWRCDPNWEKNRQRLADCAIGFGHGTTGGKGGKIYVVNDPSDHDLLNPKPGTLRFAVIQKEPLWIIFKHDMTIKLSSELIVTSHKTIDARGANVHIANGAQMTLQFVKNIIVHGLHIHGIRKHAGGMIRDSVDHFGIRTESDGDGLSLFGATNIWIDHVSLSNCDDGLIDAVAGSTAITISNCHMTRHNDVILLGASDAYSGDQIMQVTLAFNHFGQGLVQRMPRCRWGFFHIVNNDYTHWLMYAVGGSQHPTIVSQGNRFIAPPNPAAKEVTKRDYAPQSVWKNWNWRSEGDLMLNGAFFVESGTKVTNFPKSGGITAKPGSFTSSLTRFAGPLKCVVHKPC* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g1863 431 Pfam Pectate lyase, N terminus 20 72 IPR007524 GO:0030570
Ahy11g1863 431 Pfam Pectate lyase 165 349 IPR002022 -
Ahy11g1863 431 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Ahy11g1863 431 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
Ahy11g1863 431 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Ahy11g1863 431 PRINTS Pollen allergen Amb family signature 374 398 IPR018082 -
Ahy11g1863 431 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Ahy11g1863 431 PRINTS Pollen allergen Amb family signature 230 251 IPR018082 -
Ahy11g1863 431 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
Ahy11g1863 431 SMART amb_all 158 355 IPR002022 -
Ahy11g1863 431 Gene3D - 83 424 IPR012334 -
Ahy11g1863 431 PANTHER PECTATE LYASE 6 431 - -
Ahy11g1863 431 PANTHER PECTATE LYASE 18-RELATED 6 431 IPR045032 GO:0030570
Ahy11g1863 431 SUPERFAMILY Pectin lyase-like 84 422 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g1863 Ahy-Chr11 121100122 121103030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g1863 5 431 Polysaccharide Lyase AT5G15110 53.780 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g1863 K01728 - gmx:100801864 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1863 11 121100122 121103030 Ahy20g2515 20 132760390 132764463 ECH
Ahy13g3792 13 137107100 137108825 Ahy11g1863 11 121100122 121103030 ECH
Ahy11g1863 11 121100122 121103030 Ahy11g1863 11 121100122 121103030 ECH