Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g1701 ATGGGCCTGGGCAAAACTGTTCAGGCCATTACATATTTAACTTTGTTGAATCACTTGCATAATGATCCTGGTCCACATCTCATGGTATGTCCTGCTTTTGTTTTGGAAAACTGGGAAAGGGAACTAAAGAAGTGGTGCCCGTCAGTTTCTACTCTTCAATACCATGGGGCTGGACGAACAGCATATTGCAAGGAGTTGAACTCCCTCTCGAAGGCAGGGTTGCCTCCTCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGGCACAGTCCACAGCAGAAAGATGATCGTAAAATATTGAAGCGCTGGAGGTGGAGCTGCATGCTGATGGATGAAGCTCATGCTTTGAAGGATTGA 363 0.4463 MGLGKTVQAITYLTLLNHLHNDPGPHLMVCPAFVLENWERELKKWCPSVSTLQYHGAGRTAYCKELNSLSKAGLPPPFNVLLVCYSLFERHSPQQKDDRKILKRWRWSCMLMDEAHALKD* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g1701 120 Pfam SNF2-related domain 1 119 IPR000330 GO:0005524|GO:0140658
Ahy11g1701 120 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 120 IPR014001 -
Ahy11g1701 120 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 1 120 - -
Ahy11g1701 120 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 119 IPR027417 -
Ahy11g1701 120 PANTHER SNF2/RAD54 HELICASE FAMILY 1 120 - -
Ahy11g1701 120 Gene3D - 1 120 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g1701 Ahy-Chr11 105238545 105239264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g1701 2 120 RAD5 or RAD16-like Gene Family AT3G16600 26.797 2.59e-08 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ahy11g1701 SNF2_N 2.70E-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g1701 K14439 - aip:110271674 260.766