Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g1658 ATGAGACAAGTTTTCCGTGCATCAATCATTACCGATCTCACTATCATTGCTGGCCAGCAGTGGAAACACGTTAAGGGCATCGCCGATGCCATTTGCAACCGGATTCTTGAGGTTGGTGGTGATAGGTTGGACTCAATAGGAACTGTAGGTAATACAAGAGAAGAAGGGTTGAATGAATGGCAGCAAAAGAGATTTTCTAATGATAGTTGGAACATATTTCAAACTTCGAAGACTTATAATCCCAATGGTGCCCGGTTTGCTGAACCAAAAACTTTTCTAAGGTTTTCAACTGTTTTCACTCTCTCTCATGCGGCACTGGACAGAGTTAAGCCGGTACTGCTGGCTACTCTATCGTTGCCTAATCAACCTGGACCAATTTCCTCGAACCTGCAAAATCATGGACAAGCGCCTCAGCTACAGTTTCTTCCACCTCCAGTTCCATCTTCAACACAAATTAGTCTTGGGAGCTCGTTGCAAGGAGATGGTGCCTCAATAAGTACACCCATCTCAAATCCATTACCTGATATGCAGGGCCAAAGTTTACATTTACATGGGGGAACCTTGCCATCTTTGTGCCCATCTCATCCCCATGCTGATGCTTCGGTGACAAGTCAACCTCCACCTGTATATCTTGATTTGAATAGTTCACTAGTGAACCATGGTGTGATCTCGGTAACTAATCCACTCACCAATCCACCCACTGGACTGGTTTGTTATGAAGGTGTAATCAGTGCCTTATACATTGAGCTTCCTAGACAATGCACGAGCTGCAGTCTCTTATTCAAATGGCAAGATGAGCACAGTACACATATGGATTGGCACGTGACTAGGAACCGAATGTCAAAAAGTCGGAAGCGGAAAGGGTCTCAAAAGTGGTTTGCAAGTGGGAGCATGTGGCTAAGTGGTGCAGAGTCTTTGGGAAAGGAATCGATTCTAGGGTTGTTGGCTCCCGAGGAGACAGAGGAAATGAAAAATGAGGAAGAGTTAGGCGTTCCTGCTGAAGAGGATCAGAGTAGATGTGCACTATGTAGAGAGGGCTTCGATGAGTTTTACAGCCACGAAATGGATGAGTGGATGTATAGAGGAGCCACGTACCTTAAGGCACCCGTGGGAATAACATTGGCCACCATGGACAGACATCAACTAGGGCCCATTGTTCATTCCAAATGCAGATTTGACTATGACCCTACTATTCCCTCAACCAATAGGGAACCTACCAAGAGAGTAGTAAGAGAAAAAGAATATGGGTGGACCAAACATCAGTTTTGTGCATGA 1275 0.4518 MRQVFRASIITDLTIIAGQQWKHVKGIADAICNRILEVGGDRLDSIGTVGNTREEGLNEWQQKRFSNDSWNIFQTSKTYNPNGARFAEPKTFLRFSTVFTLSHAALDRVKPVLLATLSLPNQPGPISSNLQNHGQAPQLQFLPPPVPSSTQISLGSSLQGDGASISTPISNPLPDMQGQSLHLHGGTLPSLCPSHPHADASVTSQPPPVYLDLNSSLVNHGVISVTNPLTNPPTGLVCYEGVISALYIELPRQCTSCSLLFKWQDEHSTHMDWHVTRNRMSKSRKRKGSQKWFASGSMWLSGAESLGKESILGLLAPEETEEMKNEEELGVPAEEDQSRCALCREGFDEFYSHEMDEWMYRGATYLKAPVGITLATMDRHQLGPIVHSKCRFDYDPTIPSTNREPTKRVVREKEYGWTKHQFCA* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g1658 424 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 9 37 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Ahy11g1658 424 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 157 392 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Ahy11g1658 424 MobiDBLite consensus disorder prediction 125 157 - -
Ahy11g1658 424 ProSitePatterns Zinc finger C2H2 type domain signature. 254 274 IPR013087 -
Ahy11g1658 424 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 9 37 - -
Ahy11g1658 424 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 157 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g1658 Ahy-Chr11 94508630 94520577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g1658 180 391 C2H2 Transcription Factor Family AT4G04885 50.901 1.81e-63 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g1658 K14400 - ahf:112721559 874.004