Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ahy11g1537 | ATGGACCGTAATTCAAGAAGCTCTAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGCCTGTCAACATGGCAATAGCACTTTCTGGCCAATTTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAAAATTTGGTTCAGTCCACAACATCTGTTGCTACTGGACCTGCTGGAGTTATAGGCCCATATTCAGGGGTAGCAAGAAGGCTATATGTAGGCAATCTGCATTTCAATATGACCGAAACTGATCTTCAGATGGTATTTGAAGCATTTGGTCAGGTTGAGCTTGTCCAGCTGCCTCTTGATGAAAGTGGGAACTGCAAAGGTTTTGACTTTGTGCAGTTTGCATGCCTTGAAGATGCGAGAAATGCACAGAGCTTGAATGGTCAATTGGAAATCGGTGGCAGGACAATCAAGGACAAATTTGGGGTAAGGTCTCCGAGACATAGCTCTGCAGAAATGATGGCAGCCCTTTACCTACAAGTCAGCATTATTAGCCAGGCACTAATTTTTGTCACCAAGTCTTGCAGCTGGTCCTATGTTGAAAGACATGGTCTTCTTCTATTGGGTTCTTCATGA | 591 | 0.4382 | MDRNSRSSKGVGYIEFYDVMPVNMAIALSGQFLLGQPVMVKPSEAEKNLVQSTTSVATGPAGVIGPYSGVARRLYVGNLHFNMTETDLQMVFEAFGQVELVQLPLDESGNCKGFDFVQFACLEDARNAQSLNGQLEIGGRTIKDKFGVRSPRHSSAEMMAALYLQVSIISQALIFVTKSCSWSYVERHGLLLLGSS* | 197 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ahy11g1537 | 196 | SUPERFAMILY | RNA-binding domain, RBD | 72 | 147 | IPR035979 | GO:0003676 | |
| Ahy11g1537 | 196 | Gene3D | - | 68 | 120 | IPR012677 | - | |
| Ahy11g1537 | 196 | SMART | rrm1_1 | 73 | 145 | IPR000504 | GO:0003723 | |
| Ahy11g1537 | 196 | Gene3D | - | 1 | 54 | IPR012677 | - | |
| Ahy11g1537 | 196 | Gene3D | - | 121 | 196 | - | - | |
| Ahy11g1537 | 196 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 72 | 149 | IPR000504 | GO:0003723 | |
| Ahy11g1537 | 196 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 74 | 143 | IPR000504 | GO:0003723 | |
| Ahy11g1537 | 196 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 1 | 143 | - | - | |
| Ahy11g1537 | 196 | SUPERFAMILY | RNA-binding domain, RBD | 2 | 48 | IPR035979 | GO:0003676 | |
| Ahy11g1537 | 196 | PANTHER | CC1-LIKE SPLICING FACTOR | 1 | 143 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ahy11g1537 | Ahy-Chr11 | 69067323 | 69069644 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ahy11g1537 | 144 | 193 | Primary Pumps ATPases | AT2G18960 | 72.000 | 2.00e-16 | 75.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ahy11g1537 | K13091 | - | ahf:112721449 | 388.267 |