Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g1306 ATGGACATGGAAGAAACTGTCCCTTTAGAGAGCGAAACACAACCAACTACGTCCTTCTCTTTCCCCATTATACCCTCCACGTCCTCCTCTTCCTCCTCCTCCTCCAAGAAGAAGAAGAAGGTGGTTTTGAAGAGGAGCAATGATGGGAGGCACCCAACTTATAGAGGAGTACGAATGCGCCAATGGGGAAAGTGGGTATCTGAAATTCGGGAGCCTAGGAAGAAATCTAGGATTTGGCTTGGAACTTTCCCCACGGCTGAGATGGCGGCTCGAGCCCATGATGTGGCGGCTCTAACAATCAAGGGCAGCTCAACTTACCTCAATTTTCCTGAGCTAATAGCCGAATTGCCTCGTCCGGCTAGCAATTGTCCTAAAGACATTCAAGCAGCCGCAGCCAAAGCTGCCGTCATGAATTATCACCATGAAAGCCATGACATAGAATTAGAAGCCGAGTCCGAACTAAGCCAAGTAGAGTCTTCTTCAAGTCAAACTCAAATATCATCAACTTCTACTTCATCATTATTGAAGGGTGAGGATGACATGTTCATGAATCTCCCTGATCTATCATCAGACTTGAATCATAGTGCTGATGAGTTTCATTACCTCTCGGCTTGGGTCATAGCTGGAGCCGAAGCCGAACATCTAGACTCAGATTTCCGGCTTGAAGAACCGTTCTTATGGTAG 684 0.4693 MDMEETVPLESETQPTTSFSFPIIPSTSSSSSSSSKKKKKVVLKRSNDGRHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALTIKGSSTYLNFPELIAELPRPASNCPKDIQAAAAKAAVMNYHHESHDIELEAESELSQVESSSSQTQISSTSTSSLLKGEDDMFMNLPDLSSDLNHSADEFHYLSAWVIAGAEAEHLDSDFRLEEPFLW* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g1306 227 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Ahy11g1306 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 27 227 - -
Ahy11g1306 227 MobiDBLite consensus disorder prediction 153 172 - -
Ahy11g1306 227 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Ahy11g1306 227 SUPERFAMILY DNA-binding domain 53 111 IPR016177 GO:0003677
Ahy11g1306 227 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Ahy11g1306 227 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Ahy11g1306 227 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Ahy11g1306 227 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Ahy11g1306 227 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Ahy11g1306 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 27 227 - -
Ahy11g1306 227 MobiDBLite consensus disorder prediction 1 54 - -
Ahy11g1306 227 MobiDBLite consensus disorder prediction 9 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g1306 Ahy-Chr11 45348980 45350429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g1306 44 226 AP2-EREBP Transcription Factor Family AT2G44940 50.000 2.14e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ahy11g1306 AP2 1.20E-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g1306 - - aip:107629817 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1306 11 45348980 45350429 Ahy1g1288 1 37814767 37816220 hybridization