Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g1276 ATGGAGCTTAAGCACCAACTTGGTCTTCTTTGCGTTATACTGCTTTTACCAGCACTAAGCAGTGCCACTAATAAAGACTACTGCCCTCCTTATAAGAACTCTAGAGCAACCTATTATGGTACCCGTGATGGTTATGGCACTCCAAGGGGAGCATGTGGATTTGGCGAATACGGAAGGACGGTGAATGATGGCATGGTTGCAGCTGTATCTGGGCTATGGAATGATGGACGTGGCTGCGGTGCATGCTATCAGGTTAAATGTAAAGTACCAAAATTGTGCAATGTCAACGGGGTAACAGTGGTGGCAACAGATTATGGTCAGGGAGACAGAACAGACTTCATATTGAGCCCACGAGCCTTTAATAGTTTGGGTGTGAACCCTGATGCATCTAAAGAGCTAAAAAAATACGGTACTCTTGATATTGCATACAAAAGAGTCCCTTGCACATACCCTGGCCGCAACATTGTTGTTAAGGTTCAAGAAAGTAGCAGCAACCCTGGATACTTTGCTGTGGTTCTTCAAAACCTTGGTGGATCATACGATGTCACTAATGTTGAATTGTGGGAGGATTCACGCAAACAATGGAGTCCATTGCGTAGGGTTTATGGGGCAGTGTTTGACTATGCTAACCCACCAAAGGGTCAACTCTTCTTGAGGTTCCAAGTGATTGGTTGTTACGGAACTTATTGGCAAATACCAAAGAAACCTATCCCTGCTGATTGGAAGCCCAAAATGACCTATGACACTGGACTTCAGCTTAAATAA 765 0.4444 MELKHQLGLLCVILLLPALSSATNKDYCPPYKNSRATYYGTRDGYGTPRGACGFGEYGRTVNDGMVAAVSGLWNDGRGCGACYQVKCKVPKLCNVNGVTVVATDYGQGDRTDFILSPRAFNSLGVNPDASKELKKYGTLDIAYKRVPCTYPGRNIVVKVQESSSNPGYFAVVLQNLGGSYDVTNVELWEDSRKQWSPLRRVYGAVFDYANPPKGQLFLRFQVIGCYGTYWQIPKKPIPADWKPKMTYDTGLQLK* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g1276 254 Gene3D - 149 249 IPR036749 -
Ahy11g1276 254 PANTHER EXPANSIN-B3 3 253 - -
Ahy11g1276 254 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Ahy11g1276 254 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Ahy11g1276 254 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Ahy11g1276 254 PRINTS Expansin/Lol pI family signature 136 152 IPR007118 GO:0005576
Ahy11g1276 254 Gene3D - 17 148 IPR036908 -
Ahy11g1276 254 Pfam Expansin C-terminal domain 155 225 IPR007117 -
Ahy11g1276 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 153 IPR007112 -
Ahy11g1276 254 PANTHER EXPANSIN-B1-LIKE PROTEIN 3 253 - -
Ahy11g1276 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 249 IPR007117 -
Ahy11g1276 254 SUPERFAMILY Barwin-like endoglucanases 27 152 IPR036908 -
Ahy11g1276 254 SUPERFAMILY PHL pollen allergen 153 248 IPR036749 -
Ahy11g1276 254 Pfam Lytic transglycolase 70 126 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g1276 Ahy-Chr11 42911542 42915125 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g1276 1 253 Expansin Gene Family AT4G17030 47.656 3.27e-80 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g1276 - - adu:107485050 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1276 11 42911542 42915125 Ahy1g1259 1 36002006 36004461 hybridization