Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g1275 ATGGAGCTTAATAATTTGAAGCGCCAGATCGGAATTTTTTGTGTTCTATTGATCTTACCAGCACTATGCAGTGCTGCGTTTACAAAATCCAGAGCAACATTTTATAGTACCTCTGATGGTTTAGGGACTCCAACTGGACGCTGTGGGTACGGCGACTATGGAAGGACGGTCCACGGAGGAAGTGTCGCCGGTGTGTCAAACCTCTGGAGAGATGGAGTTGGCTGTGGTCTTTGTTATCAGGTGAGGTGCACAAACCCATCGCTGTGCAACAGTAATGGAGCATACTTGGTGGTAACAGACTACGGTGCAGGAGATAGAACAGATTTCATAATGAGCCCAGCGGCCTTCTCAAGTTTGGGAGTCAACTCAACAGCAAATGATGAACTCAGGAAACTAGGCACCGTTGATATTGAATACCAGAGGATTTCATGCAGTTACCCTGGCCAAAACATTGCGATCAAAATTAAAGAGAGTAGCACCAACCCTGGTTACTTGTCTATTGTACTTTTCAATGTTGGTGGAACATGCGATGTCATTGCTATTCAGTTGTCGCAGTCGGGCAGCAACACATGGCTTTCTTTGCAGAGGGTGGACGGTGCAGTTTTTCAGATTTCAAACCCGCCAAGTGGGACCCTCAGATTCAGATTCCAAGTTAATTGCGGTTCTGGACTTCAATGGAGGCTCCCCAAGAATGACATCCCTGCTAACTGGAGGGCTGGTGCCACTTATGACACTGGCATTCAGTTTTAA 750 0.4667 MELNNLKRQIGIFCVLLILPALCSAAFTKSRATFYSTSDGLGTPTGRCGYGDYGRTVHGGSVAGVSNLWRDGVGCGLCYQVRCTNPSLCNSNGAYLVVTDYGAGDRTDFIMSPAAFSSLGVNSTANDELRKLGTVDIEYQRISCSYPGQNIAIKIKESSTNPGYLSIVLFNVGGTCDVIAIQLSQSGSNTWLSLQRVDGAVFQISNPPSGTLRFRFQVNCGSGLQWRLPKNDIPANWRAGATYDTGIQF* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g1275 249 SUPERFAMILY PHL pollen allergen 150 244 IPR036749 -
Ahy11g1275 249 Gene3D - 21 145 IPR036908 -
Ahy11g1275 249 PANTHER EXPANSIN-B3 5 248 - -
Ahy11g1275 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Ahy11g1275 249 SUPERFAMILY Barwin-like endoglucanases 13 148 IPR036908 -
Ahy11g1275 249 Pfam Lytic transglycolase 62 139 IPR009009 -
Ahy11g1275 249 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Ahy11g1275 249 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Ahy11g1275 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Ahy11g1275 249 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Ahy11g1275 249 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Ahy11g1275 249 PANTHER EXPANSIN-B1-LIKE PROTEIN 5 248 - -
Ahy11g1275 249 Pfam Expansin C-terminal domain 151 231 IPR007117 -
Ahy11g1275 249 Gene3D - 146 249 IPR036749 -
Ahy11g1275 249 PRINTS Major pollen allergen Lol pI signature 63 74 IPR005795 GO:0005576|GO:0019953
Ahy11g1275 249 PRINTS Major pollen allergen Lol pI signature 221 238 IPR005795 GO:0005576|GO:0019953
Ahy11g1275 249 PRINTS Major pollen allergen Lol pI signature 170 185 IPR005795 GO:0005576|GO:0019953
Ahy11g1275 249 PRINTS Major pollen allergen Lol pI signature 121 136 IPR005795 GO:0005576|GO:0019953
Ahy11g1275 249 PRINTS Major pollen allergen Lol pI signature 83 93 IPR005795 GO:0005576|GO:0019953
Ahy11g1275 249 PRINTS Major pollen allergen Lol pI signature 154 169 IPR005795 GO:0005576|GO:0019953
Ahy11g1275 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 245 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g1275 Ahy-Chr11 42891093 42893062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g1275 15 247 Expansin Gene Family AT4G17030 48.085 2.60e-76 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g1275 - - gmx:100779487 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1275 11 42891093 42893062 Ahy1g1249 1 35136574 35138520 hybridization