Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g1262 ATGGAGCTTAGTTTTATGCACAAACTTGGGGTTGTTTGTCTCATATTATTGGTCTTAAATAGTGCAGTGTGCTGTTTTGCGGATTCATATAGGAAATCAAGAGCATCTTATTACAATACCCCTGATGGCTACGGGAATCCATGGGGAGCTTGTGGCTATGGCGAGTACGGAAGGACTGTCAACGGTGGCAATGTTGCGGCCGTGTCCGGTGATATTTGGAAAGGTGGAAGTGGTTGCGGCGCATGCTATCAGATTCGGTGTAAAATAGCACAATATTGTGACGAAGATGGAACACGTGTAGTAGTAACAGATTACGGTGAAGGAGACAGAACAGAGTTCATAATGAGCGAACATGCATTCTCAAATTTGGCACGTGACTCAGCTGCTTCTGCAAAGTTGATGAAATATGGTGTTGTGGACATTGAATACAAGAGGGTCTCTTGTAAATACTCTAACCGCAATGTTCTTGTTAAGATCCATGAAAAGAGCAATAATCCTTATTACTTTGCTATCTTGCTTCTCAATGTTGGTGGAAAATGTGATGTTGCTGCTGTTCAGTTGTGGCAGGAAGATTACAAAGAATGGAGTCCACTGCGAAGGGTGTATGGAACAGTTTTTGATTATGAGAACCCACCAAGTGGTAAAATCACCTTAAGGTTCCAAATGGATTGTGGTGAAAGGCTTGTTTGGGTGCATCCCAAGAAACCTATCCCCAGTGATTGGAATGCTGGGGAAGCATATGACACTGGCCTTCAGTTCTAA 762 0.4304 MELSFMHKLGVVCLILLVLNSAVCCFADSYRKSRASYYNTPDGYGNPWGACGYGEYGRTVNGGNVAAVSGDIWKGGSGCGACYQIRCKIAQYCDEDGTRVVVTDYGEGDRTEFIMSEHAFSNLARDSAASAKLMKYGVVDIEYKRVSCKYSNRNVLVKIHEKSNNPYYFAILLLNVGGKCDVAAVQLWQEDYKEWSPLRRVYGTVFDYENPPSGKITLRFQMDCGERLVWVHPKKPIPSDWNAGEAYDTGLQF* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g1262 253 SUPERFAMILY PHL pollen allergen 153 248 IPR036749 -
Ahy11g1262 253 PANTHER EXPANSIN-B1-LIKE PROTEIN 5 252 - -
Ahy11g1262 253 SUPERFAMILY Barwin-like endoglucanases 16 151 IPR036908 -
Ahy11g1262 253 Pfam Expansin C-terminal domain 157 229 IPR007117 -
Ahy11g1262 253 Gene3D - 150 253 IPR036749 -
Ahy11g1262 253 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Ahy11g1262 253 PRINTS Expansin/Lol pI family signature 136 152 IPR007118 GO:0005576
Ahy11g1262 253 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Ahy11g1262 253 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Ahy11g1262 253 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Ahy11g1262 253 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Ahy11g1262 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 249 IPR007117 -
Ahy11g1262 253 Pfam Lytic transglycolase 66 142 IPR009009 -
Ahy11g1262 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 153 IPR007112 -
Ahy11g1262 253 PANTHER EXPANSIN-B3 5 252 - -
Ahy11g1262 253 Gene3D - 26 146 IPR036908 -
Ahy11g1262 253 SMART dpbb_1 65 143 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g1262 Ahy-Chr11 41899687 41903347 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g1262 1 251 Expansin Gene Family AT4G17030 47.809 4.18e-85 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g1262 - - gmx:100779487 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1262 11 41899687 41903347 Ahy1g1247 1 35014662 35017076 hybridization
Ahy5g0439 5 5170336 5172147 Ahy11g1262 11 41899687 41903347 PCT
Ahy11g1262 11 41899687 41903347 Ahy5g0439 5 5170336 5172147 PCT