Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g1184 ATGGTTTGCACTGTCAATGATTTACAACAATGGAAGGATTTCCCAAAGGGACTCAAGGTTCTTCTCCTTGAAGGAGACGCCGCTTCCGCGGCCGAGATAAAACCAAAGCTTGAAGCCATGGACTATAATGTTTCTGCTTTCTGCGACGAGAATGAAGCCTTATCAGCGATCTCAAGTAGATCCGAAAGCTTCCACATTGCCATAGTGGAGGTGAATATAAACAGCGGCCAAGGAGGTTTCAAATTTCTTGAGAATGCCAAGGATTTGCCAACCATTATGACTTCAAACGATCATTGCCTGAGCACCATGATGAAATGCATAGCGCTCGGTGCAGTTGAGTTCCTTCACAAACCTCTCTCCGAGGAGAAGCTTCGAAATATATGGCAGCATGTGGTTCACAAGGCATTCAATGCTAGTGCAAGTGTTATGTCCGAATCGCTAAAACCGGTCAAAGAATCTGTAGTATCCATGTTGCAGCTCCAAACAGACAATGAACAACAAGAAAGTACATATACTGATGATGATCCTGATCCTGGAAGCGATAAGTATCCGGCTCCATCGACCCCCCAATTGAATCAGGGATCGAGATTGATGGACGATGGCGATTGTCAAGAGCAGACTAATTGCTCAACAGAAAAGGAGAGTGGGGAACATGATGGAGAAGGAGAATCGAAATCCGTCGAAACTACATGTGGAAATTTGAATTTTGAAAGTAATAATACTAATGAACCAATGAACACTGAAAAGACTTTGGTCAAGAATTTAAGGGAAGATTCTAGAGATGGGAACCATGATAGTTCTGTTTATAAGCATACAAATGATAAGGTTCTTAGCAGCGATGATGGTAATACAAAGTCTTCAAATAAAGTGGATTCATGCACGTTAAAAGCTCATCGGAAGAAGATGAAAGTAGACTGGACACCCGAGCTGCACAAAAAATTTGTGAAAGCGGTGGAACAACTAGGCCTTGACCAGGCCATTCCATCTCGAATATTGGATCTAATGAAAGTGGAGGGATTGACAAGGCATAATGTTGCAAGCCATCTTCAGAAATATAGAATGCATAAGAGACAAATATTGCCCAAGGAAGAAGGTAGGAAATGGCTGAATCAAAGGGATCAAATGCAAAGGAGCTATTGTCTTCAACAACGACCAATAATGGCGTTTCCACCACCGAATCATTCCAATCACACCCTTTCGCCAGCTCCTATATATCCCATGTGGAGGCAATCCGGCGGTCAAGCAGCAGCTATGCCGGTCTGGGGCCCTCCCGGTTATCCTCTGTGGCATCCTACAGAAAGCTGGCACTGGAAGCCGCTTCCCGGGATGCATGCGGATGCATGGGGCTGCCCGGTTCTGCCACCTCCTCAGGCTCCTCTTCCTTGCTTTTCCTACCCTTTGAATGTCCCCGGCATGCACCATACTAGTGCTGTGGATTACAAGTCTATCATGCCACAGAGTTCCCTTGATCTTCATCTGGCCGAGGAGGTTGTTGACAAGGTAGTGAAAGAAGCAATAAGCAAGCCATGGCTACCATTACCCTTAGGCCTCAAGCCTCCTTCCACAGATAGTGTGCTGGCCGAGCTTTCGCGAAAAGGCATATCGACCTTCCCTCCATGTAGCAAGGGGTCCTAA 1635 0.4575 MVCTVNDLQQWKDFPKGLKVLLLEGDAASAAEIKPKLEAMDYNVSAFCDENEALSAISSRSESFHIAIVEVNINSGQGGFKFLENAKDLPTIMTSNDHCLSTMMKCIALGAVEFLHKPLSEEKLRNIWQHVVHKAFNASASVMSESLKPVKESVVSMLQLQTDNEQQESTYTDDDPDPGSDKYPAPSTPQLNQGSRLMDDGDCQEQTNCSTEKESGEHDGEGESKSVETTCGNLNFESNNTNEPMNTEKTLVKNLREDSRDGNHDSSVYKHTNDKVLSSDDGNTKSSNKVDSCTLKAHRKKMKVDWTPELHKKFVKAVEQLGLDQAIPSRILDLMKVEGLTRHNVASHLQKYRMHKRQILPKEEGRKWLNQRDQMQRSYCLQQRPIMAFPPPNHSNHTLSPAPIYPMWRQSGGQAAAMPVWGPPGYPLWHPTESWHWKPLPGMHADAWGCPVLPPPQAPLPCFSYPLNVPGMHHTSAVDYKSIMPQSSLDLHLAEEVVDKVVKEAISKPWLPLPLGLKPPSTDSVLAELSRKGISTFPPCSKGS* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g1184 544 Gene3D - 18 145 - -
Ahy11g1184 544 Pfam Myb-like DNA-binding domain 304 353 IPR001005 -
Ahy11g1184 544 SUPERFAMILY Homeodomain-like 299 358 IPR009057 -
Ahy11g1184 544 Gene3D - 297 359 - -
Ahy11g1184 544 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR2 1 542 - -
Ahy11g1184 544 SMART REC_2 18 128 IPR001789 GO:0000160
Ahy11g1184 544 MobiDBLite consensus disorder prediction 250 278 - -
Ahy11g1184 544 MobiDBLite consensus disorder prediction 161 289 - -
Ahy11g1184 544 MobiDBLite consensus disorder prediction 211 225 - -
Ahy11g1184 544 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 542 IPR044825 GO:0003700|GO:0045893
Ahy11g1184 544 MobiDBLite consensus disorder prediction 185 210 - -
Ahy11g1184 544 SUPERFAMILY CheY-like 16 135 IPR011006 -
Ahy11g1184 544 MobiDBLite consensus disorder prediction 226 249 - -
Ahy11g1184 544 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Ahy11g1184 544 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Ahy11g1184 544 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 298 357 IPR017930 -
Ahy11g1184 544 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 301 356 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g1184 Ahy-Chr11 36333879 36340250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g1184 1 541 Response Regulator Gene Family AT4G18020 50.871 1.29e-149 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Ahy11g1184 Response_reg 2.30E-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g1184 - - ccaj:109791214 738.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1184 11 36333879 36340250 Ahy1g1177 1 30469071 30475445 hybridization
Ahy5g0469 5 5613157 5619296 Ahy11g1184 11 36333879 36340250 PCT
Ahy11g1184 11 36333879 36340250 Ahy5g0469 5 5613157 5619296 PCT