Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g1131 ATGAGTTGCAACGGTTGCCGAGTTCTCCGAAAGGGTTGCAGCGAGACATGCATGTTGCGCCCTTGCTTGCAGTGGATCGAGACACCCGAGGCCCAAGGCCACGCCACCGTCTTCGTCGCCAAGTTCTTCGGCCGCGCCGGCCTCATGTCTTTCATTTCCAATGTACCGGAGGCCCAAAGACCCGCTCTGTTTCAGTCACTGCTGTTTGAAGCATGTGGAAGAACCGTGAATCCGGTTAATGGTGCTGTGGGGCTTTTGTGGACAGGGAACTGGCACGTGTGCCAGGCTGCAGTGGAGACGGTGCTCCGCGGAGGCACGTTGAGGCCCTCGCCGGAGTTTATGGGGATGGAATCGGCGGGTCCGGTGGTGGCCACCGACGAAGCATCGGAGGCAGAGGTCACGTGCGGTGACATATGGAAGAAGGTTCGAGATCCAAACCCGAGTTGCAGGTTCACAAGCTCACGGTCTACACGTGTTGCTGCCGGCGCCGCCGGGAAGCGTAAGCGGCTGGAGGAGGTGACGAGGGTCCAGACGGCGGCTGATCTTGATCTTCGTCTGACGCCGATCTTCCTTCAGAAGATCGCCGATTACCGGCGCCGTCCGGGATCGCCGTCGATGACGTCGGAGGAGTCCGTGACGACCACGGCGGAGATTGGAGGAGATCAGTGGGGTCACAGCGGTGAACGGAAAGTTCTCAACCTTTTCATTTGA 711 0.5963 MSCNGCRVLRKGCSETCMLRPCLQWIETPEAQGHATVFVAKFFGRAGLMSFISNVPEAQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPSPEFMGMESAGPVVATDEASEAEVTCGDIWKKVRDPNPSCRFTSSRSTRVAAGAAGKRKRLEEVTRVQTAADLDLRLTPIFLQKIADYRRRPGSPSMTSEESVTTTAEIGGDQWGHSGERKVLNLFI* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g1131 236 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Ahy11g1131 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 236 - -
Ahy11g1131 236 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Ahy11g1131 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g1131 Ahy-Chr11 33018008 33019404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g1131 1 236 AS2 family AT4G37540 57.937 4.77e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Ahy11g1131 LOB 4.50E-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g0572 15 7122766 7124358 Ahy11g1131 11 33018008 33019404 ECH
Ahy17g3235 17 134446241 134447330 Ahy11g1131 11 33018008 33019404 ECH
Ahy11g1131 11 33018008 33019404 Ahy11g1131 11 33018008 33019404 ECH
Ahy11g1131 11 33018008 33019404 Ahy1g1056 1 20123570 20125011 hybridization
Ahy11g1131 11 33018008 33019404 Ahy5g0569 5 7152919 7154331 PCT