LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy11g1078	ATGAAGAGTATAGTGGAAAATGATGATGGCGGTGTTGAGCTTAATAATGAAAACAACTGGTTGGGGTTTTCACTCTCTTCTCCACACCATCATGTTGATTCTTCTTCTTCCTCCTCTGCTGCTTCTGTTCCTCCAACAAGCTTCTACATGAACCACCATGCTTCTCATCTTAGCAGCTATGGATTCTACTACGGAATTGAACCTGACAACAATAATAATAACGTTAGCCTGTATTCTGGTTTTCCAGTTATGCCCCTCAAATCTGATGGCACTCTCTACGGAATGGACCCTCTAATCAACAGGGCACACCCACAACAAGTGATTGGTTCAAGTTCAACGCCAAAACTGGAGAATTTGTTAGGTGGCGGCGATTTGATGGAGACACCTCATCACTATGAATGTAGTGTAGCGGAAGCAATGCCTCTCAGCCTGGACACCATTTTTCATAGAAACAACCACCAACCACACTTGTCATACTACCATGGGCTTCTAGAAGGTTCCAACAAGCAAAGTACGCAAGCTTCAGACACCAACGACAACAATCTCAAGAACTGGGGGGTGATTGAGGTGAATAATGGAGGTGGTGAATTATTAGGAGCTTCTTCAATTGGAACAATGAGTTATGGGGGGGACTTGCAGTCTTTGAGCTTGTCAATGAGTCCGAGCTCGCAATCGAGCTGCGTCACGAGTTCGCAGCAGCGTGTGAGTGTCAATGGCATTGATTCCATTGTTGGCAGCATGGATGCAACAAAGAAGAGGGGTTCTGAAAAGGTTCAACAGAAGCATATTGTTCATAGAAAATCCATTGACACGTTTGGGCAAAGAACCTCACAGTATAGAGGTGTAACAAGGCATAGATGGACTGGTAGATATGAAGCACATCTATGGGACAATAGCTGCAAGAAAGAAGGCCAAAGTAGGAAAGGAAGGCAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATATGGCGGCACTCAAGTACTGGGGACCCTCCACACACATTAACTTCCCTTTGGAAAATTATCAAAATCAACTTGAGGAAATGAAGAACATGACCAGACAAGAATATGTTGCTCATTTAAGAAGAAAAAGCAGCGGATTCTCAAGGGGAGCTTCAATGTACAGAGGAGTAACTAGACATCACCAACATGGAAGGTGGCAAGCTCGAATTGGAAGGGTAGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGCACACAAGAGGAAGCAGCAGAAGCTTATGATATTGCAGCCATAAAATTCAGAGGGGTTAATGCCGTAACAAACTTTGACATAACAAGATATGATGTCGAAAAAATCATGGCAAGCAACAACCTTCTAAGCAGTGAGCTAGCACGGCGGAACAAAGAGGTTCTTGTTGGCAGAGCCGGTGAGTTTAGTAACAACCTTGATAACCAAAGCCAAGAATCGATTCTAATGCAAATCAGCCAGAGCCAGCCAAGACTGGAGGCAATAGACAATATGTTTTTTCAAGAAGTGGAGGATCCGAGCAAGATTTATGCGCATTTGCATAATGCGCATGCATCGAATCCTTCTTCGCTTGCAACAAGCTTGAACAGCTCAAGAGAAGGTAGCCCTGAAAACAGGACAAGCTTGCCAATGCTCTCTGCCGGAGGAGTAGCTTCTACCAAGCTATTGGCAGCCGCGGCAACTATTCCGGTGCTTTCTTTGCCTCAGATGCCGGTTTTTGCTGCTTGGACAGATGCATAG	1752	0.4446	MKSIVENDDGGVELNNENNWLGFSLSSPHHHVDSSSSSSAASVPPTSFYMNHHASHLSSYGFYYGIEPDNNNNNVSLYSGFPVMPLKSDGTLYGMDPLINRAHPQQVIGSSSTPKLENLLGGGDLMETPHHYECSVAEAMPLSLDTIFHRNNHQPHLSYYHGLLEGSNKQSTQASDTNDNNLKNWGVIEVNNGGGELLGASSIGTMSYGGDLQSLSLSMSPSSQSSCVTSSQQRVSVNGIDSIVGSMDATKKRGSEKVQQKHIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDMAALKYWGPSTHINFPLENYQNQLEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITRYDVEKIMASNNLLSSELARRNKEVLVGRAGEFSNNLDNQSQESILMQISQSQPRLEAIDNMFFQEVEDPSKIYAHLHNAHASNPSSLATSLNSSREGSPENRTSLPMLSAGGVASTKLLAAAATIPVLSLPQMPVFAAWTDA*	584

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy11g1078	583	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	16	169	-	-
	Ahy11g1078	583	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	179	581	-	-
	Ahy11g1078	583	PRINTS	Ethylene responsive element binding protein signature	420	440	IPR001471	GO:0003700\|GO:0006355
	Ahy11g1078	583	PRINTS	Ethylene responsive element binding protein signature	279	290	IPR001471	GO:0003700\|GO:0006355
	Ahy11g1078	583	Pfam	AP2 domain	278	336	IPR001471	GO:0003700\|GO:0006355
	Ahy11g1078	583	Pfam	AP2 domain	381	430	IPR001471	GO:0003700\|GO:0006355
	Ahy11g1078	583	SUPERFAMILY	DNA-binding domain	379	439	IPR016177	GO:0003677
	Ahy11g1078	583	MobiDBLite	consensus disorder prediction	525	548	-	-
	Ahy11g1078	583	SUPERFAMILY	DNA-binding domain	277	346	IPR016177	GO:0003677
	Ahy11g1078	583	Gene3D	AP2/ERF domain	380	440	IPR036955	GO:0003700\|GO:0006355
	Ahy11g1078	583	Gene3D	AP2/ERF domain	277	346	IPR036955	GO:0003700\|GO:0006355
	Ahy11g1078	583	ProSiteProfiles	AP2/ERF domain profile.	278	344	IPR001471	GO:0003700\|GO:0006355
	Ahy11g1078	583	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT	179	581	-	-
	Ahy11g1078	583	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT	16	169	-	-
	Ahy11g1078	583	SMART	rav1_2	278	350	IPR001471	GO:0003700\|GO:0006355
	Ahy11g1078	583	SMART	rav1_2	380	444	IPR001471	GO:0003700\|GO:0006355
	Ahy11g1078	583	CDD	AP2	379	440	IPR001471	GO:0003700\|GO:0006355
	Ahy11g1078	583	ProSiteProfiles	AP2/ERF domain profile.	380	438	IPR001471	GO:0003700\|GO:0006355
	Ahy11g1078	583	CDD	AP2	277	344	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy11g1078	Ahy-Chr11	29752022	29757730	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy11g1078	1	583	AP2-EREBP Transcription Factor Family	AT4G37750	48.878	2.17e-168	488

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-AP2	Ahy11g1078		AP2	2.10E-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy11g1078	K09285		-	gmx:100787611	637.876

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy11g1078	11	29752022	29757730	Ahy1g1103	1	22752482	22758063	hybridization
	Ahy15g0528	15	6507264	6510483	Ahy11g1078	11	29752022	29757730	PCT
	Ahy11g1078	11	29752022	29757730	Ahy15g0528	15	6507264	6510483	PCT