Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g1031 ATGCCAGTTCCACTTGCTCCTTATCCAACACCACCGGCTCCACATACTCCTCCATCCGCAAATGGTCAACAGAGCCAACTTGTGTGTTCTGGCTGTAGAAACCTTTTGCTCTATCCGGTTGGAGCCTCCTCTGTTTGCTGTGCTGTTTGCAATGCAGTCACCGCCGTGCCGCCTCCCGGAACGGAAATGGCCCAGTTAATCTGTGGAGGCTGCCATACATTACTAATGTACATCCGTGGCGCAACAAGTGTCCAATGCTCATGCTGTCACACTGTGAATCTAGCCATGGAAGGCATCAACAAGCATCACAGAGCAGAAGTTCAGCAACTAAATCAAACTATATATAGAGCAAAGTTAAATGATACAGAGACTCTACTATCTTGGTTTTGCTAG 393 0.4784 MPVPLAPYPTPPAPHTPPSANGQQSQLVCSGCRNLLLYPVGASSVCCAVCNAVTAVPPPGTEMAQLICGGCHTLLMYIRGATSVQCSCCHTVNLAMEGINKHHRAEVQQLNQTIYRAKLNDTETLLSWFC* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g1031 130 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 65 94 IPR005735 -
Ahy11g1031 130 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 26 56 IPR005735 -
Ahy11g1031 130 PANTHER PROTEIN LSD1 1 101 IPR040319 -
Ahy11g1031 130 MobiDBLite consensus disorder prediction 1 20 - -
Ahy11g1031 130 PANTHER PROTEIN LOL1 1 101 - -
Ahy11g1031 130 MobiDBLite consensus disorder prediction 1 18 - -
Ahy11g1031 130 Pfam LSD1 zinc finger 68 92 IPR005735 -
Ahy11g1031 130 Pfam LSD1 zinc finger 29 53 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g1031 Ahy-Chr11 23916766 23919311 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Ahy11g1031 zf-LSD1 8.90E-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g1031 - - rcu:8284618 159.458
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g1031 11 23916766 23919311 Ahy1g1151 1 28530368 28532796 hybridization
Ahy5g0485 5 5831576 5833325 Ahy11g1031 11 23916766 23919311 PCT
Ahy11g1031 11 23916766 23919311 Ahy5g0485 5 5831576 5833325 PCT