Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g0852 ATGGCTAGTGGGTTTGGGGAATCAACAACAACGCCGAGAAGAGAGTCTCATCCAAGCCCATCTTGCTCAGGGAACAATGGTTCTAATGATGCTGGTGATTTTGAATGCAACATATGCTTTGATTTGGCTCAAGATCCAGTGATCACACTGTGTGGGCACCTATTCTGTTGGCCATGCCTTTATATGTGGCTGCATCATCACTCTCAATGTCAAGAGTGCCCTGTGTGCAAGGCCCTTGTGCAGGAAGAGAAGCTGGTTCCTCTTTATGGCAGGGGTAAGGCTCAGACTGATCCTAGGACTAAGAGCTATCCTGGAATGGAGGTTCCTCGCCGTCCCTCCGGCCAGAGGCCGGAGACAGCGCCACAGCCGCCACCCCAACAGCCGGGGCCCAATTTGTTCGGGAATTATGGGTTTGGGTTGATGGGCGGATTCATACCTATGGCTACGGCAACATTTGGGAACTTCACACTGTCCACTGCTTTTGGAGGGTTTATCCCATCACTGCTTAACATTCAATTCCAACCGTTTCATGATGCCACTGTCTATGGAACAACTTCGGGGTATCCTTTTGGGTTTACTTCACACCAAGGTGGTAATCCTCGAGGCTTTACGCAGGCAGCGACACGTCAAGAGCTGAGGCCTGAGGACAATGCTCTGAAGAATCTGCTTTTGTTGATTGGTTTACTTGTACTTATCACCGTCATTTTTGTGTTGTAA 717 0.4951 MASGFGESTTTPRRESHPSPSCSGNNGSNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYMWLHHHSQCQECPVCKALVQEEKLVPLYGRGKAQTDPRTKSYPGMEVPRRPSGQRPETAPQPPPQQPGPNLFGNYGFGLMGGFIPMATATFGNFTLSTAFGGFIPSLLNIQFQPFHDATVYGTTSGYPFGFTSHQGGNPRGFTQAATRQELRPEDNALKNLLLLIGLLVLITVIFVL* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g0852 238 SMART ring_2 36 76 IPR001841 -
Ahy11g0852 238 MobiDBLite consensus disorder prediction 1 25 - -
Ahy11g0852 238 CDD RING-HC_AtRMA_like 34 78 - -
Ahy11g0852 238 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 236 - -
Ahy11g0852 238 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Ahy11g0852 238 MobiDBLite consensus disorder prediction 116 130 - -
Ahy11g0852 238 MobiDBLite consensus disorder prediction 90 131 - -
Ahy11g0852 238 Pfam Zinc finger, C3HC4 type (RING finger) 35 76 - -
Ahy11g0852 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 99 IPR013083 -
Ahy11g0852 238 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 236 IPR045103 GO:0005783|GO:0006511|GO:0061630
Ahy11g0852 238 ProSiteProfiles Zinc finger RING-type profile. 36 77 IPR001841 -
Ahy11g0852 238 SUPERFAMILY RING/U-box 32 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g0852 Ahy-Chr11 16026176 16027584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g0852 25 236 C3H Transcription Factor Family AT2G23780 59.729 1.74e-86 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g0852 K10666 - gmx:100814783 343.584