Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g0819 ATGATGAATCATTGTTGCAGTAACAGCAACTCTCAGGATCACGTGATGGGCACGTGTAAATGCGGCATGTTCCCCACACCCTATGGAGATGACTATTATTACGGTGACCCAAACAGCTACTCCTTTACACCTTCTTCGTCGTCTTTGTCTTGGTCGTCCGTGGACTGTACCCTCTCCCTGGGGACACCGTCCACGCGATTCTCCGAAGACGAAGACAGGCGAACACGTCATCATCATCATGAACGTCGCTCCAAACAGAATCCTCATCATTCTGAGGCTAAAGCCAGCAAGGGATCCGACGGTGATGCTTTCTTTTCTCGCCGCTGTGCCAACTGTGATACCACTTCCACACCCCTATGGAGGAACGGTCCTCGTGGACCCAAGACACTATGCAATGCATGCGGGATTAGATACAAGAAAGAAGAGAGAAGAGCCAGCGCTACTGCAGCCGCTACCACAACCACCGTTACTAACAGCGGCGGCGAAATGGAGCCGGTTGCGGCGCACATGTACGGCCGCAACAATAACAATTCGTGGTACTATACAAACTCTCAAGGCAATAATAATGGCGAGTTACGTTTCATGGATTATGATGCCAATGATGACATGGACCCATTCCCTTCTTGGAGACTCAACGCTGCAGACAGAACAAATCTCGTTCACGACTTTACAAGATGA 678 0.5 MMNHCCSNSNSQDHVMGTCKCGMFPTPYGDDYYYGDPNSYSFTPSSSSLSWSSVDCTLSLGTPSTRFSEDEDRRTRHHHHERRSKQNPHHSEAKASKGSDGDAFFSRRCANCDTTSTPLWRNGPRGPKTLCNACGIRYKKEERRASATAAATTTTVTNSGGEMEPVAAHMYGRNNNNSWYYTNSQGNNNGELRFMDYDANDDMDPFPSWRLNAADRTNLVHDFTR* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g0819 225 ProSiteProfiles GATA-type zinc finger domain profile. 106 139 IPR000679 GO:0006355|GO:0043565
Ahy11g0819 225 MobiDBLite consensus disorder prediction 63 102 - -
Ahy11g0819 225 Pfam GATA zinc finger 109 143 IPR000679 GO:0006355|GO:0043565
Ahy11g0819 225 Gene3D - 105 167 IPR013088 GO:0006355|GO:0008270
Ahy11g0819 225 SMART GATA_3 103 155 IPR000679 GO:0006355|GO:0043565
Ahy11g0819 225 ProSitePatterns GATA-type zinc finger domain. 109 134 IPR000679 GO:0006355|GO:0043565
Ahy11g0819 225 CDD ZnF_GATA 108 140 IPR000679 GO:0006355|GO:0043565
Ahy11g0819 225 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 105 147 - -
Ahy11g0819 225 PANTHER GATA TRANSCRIPTION FACTOR 18 21 222 IPR044272 GO:0003700|GO:0009908
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g0819 Ahy-Chr11 15059039 15060941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g0819 52 225 C2C2-Gata Transcription Factor Family AT3G50870 41.597 8.03e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ahy11g0819 GATA 9.10E-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g0819 - - gsj:114390318 182.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g0819 11 15059039 15060941 Ahy1g0075 1 1145991 1148269 hybridization
Ahy5g0781 5 10491824 10493414 Ahy11g0819 11 15059039 15060941 PCT
Ahy11g0819 11 15059039 15060941 Ahy5g0356 5 4161435 4169931 PCT