Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g0777 ATGAACATGATGCTGGCTTCGTTCCCTGTATACCCAAAACCCTTTGCAAGCGTTAGAGCAGAATTCCACACACAGCAATCTTCTTTTCTCAAGTTCGCACCTCATTCCTATCCTCTTGCAAGCAAAATCCTTGTTAAGAATTTGCCATATACTACTGGTGAGACTACTTTGCAAAAGGAATTTTCGAATTTTGGCAAGATAGCTGAAGTTAAGGTTGCTAAAGATGTAAAAACGAAAAGATCAAAAGGATATGCTTTTATTCAATACATGTGTCAAGATGACGCCATGCTTGCGCTAGAAACAATGGATCAGAAGGATTTTTATGGTAGGACGATTCATGTAGAAATCGCAAAGCTTGGCTGGGATGATTATGGTGCACGGCCAAGGACCTCAGGGCCCCAAAAGAAATGGACTTTGCCAGAGCCAGAGCAAGAGGAGGTGGTAGATTGCTGGTACTGA 459 0.4227 MNMMLASFPVYPKPFASVRAEFHTQQSSFLKFAPHSYPLASKILVKNLPYTTGETTLQKEFSNFGKIAEVKVAKDVKTKRSKGYAFIQYMCQDDAMLALETMDQKDFYGRTIHVEIAKLGWDDYGARPRTSGPQKKWTLPEPEQEEVVDCWY* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g0777 152 Gene3D - 21 143 IPR012677 -
Ahy11g0777 152 CDD RRM3_RBM19_RRM2_MRD1 42 114 - -
Ahy11g0777 152 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 21 150 - -
Ahy11g0777 152 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 113 IPR000504 GO:0003723
Ahy11g0777 152 SMART rrm1_1 42 115 IPR000504 GO:0003723
Ahy11g0777 152 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 21 150 - -
Ahy11g0777 152 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 119 IPR000504 GO:0003723
Ahy11g0777 152 SUPERFAMILY RNA-binding domain, RBD 41 124 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g0777 Ahy-Chr11 13697952 13699924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g0777 5 114 Eukaryotic Initiation Factors Gene Family AT4G34110 30.000 1.24e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g0777 - - gmx:100305971 222.631