Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g0758 ATGCCATACTACGACGTAGTATGCGTCATGGAGAAAGGGTCTCCGTGCATGGTCCCTACAGTCTCTAAAGTTAGAGGACCACCGATACTCTCCGCTATGCAACTCAAGAAAGGGTTCAAGAAGGGAGAGATTACATATTTGGCCCTACTACAAGAGGAGTCAACACTTGAAAGAGAAGACGTTCCTCCCGAAATCAAGGAAGTCCTTGAAGAAAATAAGGATGTGATGCCTCCCGAGTTGCCAAAACAACTACCACCTAGGAGGAAGGTGGACCACAAGATTGAATTGGAGTTAGGAGCAAAGCCGCCCGCCTCAACACCGTATAGAATGGCACCGCCAGAACTCGAGGAGTTGAAGAAGCAACTCAAGGATTTGCTAGATGCTGGGTTCATCCGTCCATCGAAGGCACCTTATGGCGCACCAGTCTTATTCCAAAAGAAGCATGATGGTTCATTGAGGTTATGCATCGACTATCGAGCACTTAACAAGGTAACCATCAAGAACAAATACCCCATTCCTTTGATAGCCGATTTGTTTGATCAACTTGGTAGAGCCAAGTGGTTCTCAAAGCTAGATTTGAGGTCAGGATATCACCAAGTGAGAATTGTCGATGGTGATGAACCTAAGACCACGTGTGTCACGAGGTATGGATCGTATGAGTGGTTGGTGATGCCTTTTGGCTTGACCAATGCTCCTGCGACCTTCTGTACCTTGATGAACGAGATCTTTCGACCTTATCTTGATCGGTTTGTAGTGGTCTACTTGGATGATATTGTTGTCTATAACAATACCTTGGAGGAACATGTAGAACACTTACGAACCGTGTTCAAGATCTTGCGAGAGAATAACCTATATGTGAAGAAGGAAAAGTGTTCCTTTGCAAGGGACGAAGTCCACTTCTTGGGACACATCATTAAAGGTGGAACTCTCTGCATGGATCAAGGAAAGGTGAAGGCTATCAAAGAGTGGGAGCCGCCAAACAAGGTATCTGAATTGAGGTCATTCCTTGGGTTGGCTAATTACTATCGGAGGTTTATCAAGGGATACTCCGCTAAGGCTGCACCATTAACTGATCTTCTCAAGAAGAATCACTCTTGGGAATGGTCAAAGGAGTGTCAAAAGGCCTTTGATGAGTTGAAGGCTGCTATCACAGAAGGACCAGTACTAGCACTACCCGACTACTCAAAGGTATTTGAAGTCCACACTGATGCTTCTGACTACGCTATTGGAGGAGTTCTGATGCAAGAAGGACATCCTATTGCCTTTGAGAGTCGCAAGTTGAATGATACAGAGAGGCGATACACTGTCCAAGAGAAGGAGATGACCGCGGTGGTGCATTGTCTGAGAACTTGGCGTCACTACTTGCTTGGTTCACACTTCATCGTCAAGACAGACAATGTGGCTACAAGCTACTTCCAAACTCAAAAGAAGTTAAGCCCCAAACAAGCTAGGTGGCAAGACTTCTTGGCTGAGTTTGATTTCGAATTCGAATACAAGTCAGGCAAGACTAATGTCGTAGCAGATGCGCTGAGTCGCAAGGCTGAGTTAGCGGCCATTTCTCTGGTGGAAGGAGATATTATGCATATCATCAAGGAAGGGTTGCATCACGATCCATTAGCCAAGAAGTTGGTGGAGTTGGCTAGAGAAGGTAAGACCAAAAGATTTTGGTTAGAAAACGACCTTCTCTACACAAAAGGGAGAAGACTATACGTTCCTAAATGGGACAATCTGAGAAGGAAGTTGGTAAGAGAATGCCACGACACCAAATGGGCTGGTCACCAAGGTCAGCGAAGGACCTTAGCACTCATTGAATCTTCTTATTATTGGCCTCAAATGAGAGCTGAAGTGGAGAGCTACGTGAAGACTTGTCTTGTGTGCCAACAAGATAAGATTGAAAACAAGACACCAAGTGGGTTGTTGGAACCTCTGCCTCCATCAGAGCGACATATGGATCATAATAATGGTTTGGTTTTGAAGTGTAACGGTTCTACGAAATGCTTCACTGACCAAGACCCATTTTTTGATCCATTGGAGGAACAAGTGTTATATGAATCAGCATTGACCTCATTGTGCATAACGAACAACTCAATGGAAAATCAACATTCTAATCAAGTGATTATGGCAGAAGCTGATTTTCCATCAAGTTCTGAGGTATCCAAGAATTTGTTAGAGCCAATTGATGTGTCAGAAGAGTTCTTGAACTTCACTTCAGTGGACGATATTTGCCAATGGTTTGATCCTTCACAAGAGGATAATAACTCAAACACCTTTTTAGAACCAATGCAATGTGATGCTACTTCTTTTTCTTGGAAATCAGTTATGGATAGCTATGAGAATTGTCTATTGGGAAGCAAGGAACCCGAGTCGAATTTGATCGCACCGGCGGCGAGTTCTGCTGATGATACTACCATCTTTGAATGCCTATCAGAGTTTGATTTTGATGTGCCGACAATGTTATTCTCAGATTCATCAATTGAGGAGCTTTTGAATTGTGAAGAAGCAATTTGCAACAACCCTTTGAATAATGGTTCTAGTTCTGTTTTGGAGTTATCATCAGAAAACAATAAAATGGAGATGATGGAGAACATTTCAAATCCAATGAACTTCACAAAAAATCTTGCTTGGTTTGAGGCTAGAAACAACTTGACCCAGCCGGTTCCGGATTTGGACACAACAAACAAAATCAAGAGAAAGAAAGTGCAGCTAGGCTTGGTTATGGATGATAGTCATAGCATTAAGCTTGGGGAGACCATTCTTGTGCCGCCTCGGAAGAAAGAGGAGCCAAAAAAACCTAGCAAGAAGAAGGACAAGGCAGGGGTGGGTAGTCGGCCGCGGCCAAAAGATCGCCAGAGGATTCAAGACTGCATTCGACAATTGAGAACAATCATCCCTGGCAAGAATGTTAAAGAGTGTAGCATTGATAATTTGTTAGAGTGCTCCATCAGATACATGAGTTTCTTGTCAAGCACTGCACATTATGCAAACAAGCTACAAGAACCAGATAAGCCTAAGGCAAATGGAGTGGTTCTACAAGAGAGTAGTGTGGAAGGTAGCAAATATTGTGGAACATGGTCATTTGAAGAGCCACATCAAACATTGTTATGCCCAATTATAGTTGAGGACATGTCTCATCCTGGCCAAATGCTTATAGAGTTGCTCTGTGAGGAGGAAGGGTTCTCTCTTGAGATGGTTGACACAATTAAGGGTCTTGGTTTAAATATCCTGAAAGCAAAGATGGAAACAAGGAATAAAAAACTATGGGCACGCTTTATTGTTGAGGTTTTCATTGTTCAACAGGCCAATAGACATGTTACAAAAATAGATGTGTTTTGGTCCCTTCTCCATCTTGTAGAGCAGAAAAACTCCTCAGGAACTGGAATGGATTCATCAACTAATAATAACAAGTATTGCAATGTAATGAATGATAGCAGTGTTTCAAGATTGGACAAACAACAACAAGAGAAAGAGAGTTGCAACCTTTTTATGTCCAGGACAGAGTAA 3501 0.4287 MPYYDVVCVMEKGSPCMVPTVSKVRGPPILSAMQLKKGFKKGEITYLALLQEESTLEREDVPPEIKEVLEENKDVMPPELPKQLPPRRKVDHKIELELGAKPPASTPYRMAPPELEELKKQLKDLLDAGFIRPSKAPYGAPVLFQKKHDGSLRLCIDYRALNKVTIKNKYPIPLIADLFDQLGRAKWFSKLDLRSGYHQVRIVDGDEPKTTCVTRYGSYEWLVMPFGLTNAPATFCTLMNEIFRPYLDRFVVVYLDDIVVYNNTLEEHVEHLRTVFKILRENNLYVKKEKCSFARDEVHFLGHIIKGGTLCMDQGKVKAIKEWEPPNKVSELRSFLGLANYYRRFIKGYSAKAAPLTDLLKKNHSWEWSKECQKAFDELKAAITEGPVLALPDYSKVFEVHTDASDYAIGGVLMQEGHPIAFESRKLNDTERRYTVQEKEMTAVVHCLRTWRHYLLGSHFIVKTDNVATSYFQTQKKLSPKQARWQDFLAEFDFEFEYKSGKTNVVADALSRKAELAAISLVEGDIMHIIKEGLHHDPLAKKLVELAREGKTKRFWLENDLLYTKGRRLYVPKWDNLRRKLVRECHDTKWAGHQGQRRTLALIESSYYWPQMRAEVESYVKTCLVCQQDKIENKTPSGLLEPLPPSERHMDHNNGLVLKCNGSTKCFTDQDPFFDPLEEQVLYESALTSLCITNNSMENQHSNQVIMAEADFPSSSEVSKNLLEPIDVSEEFLNFTSVDDICQWFDPSQEDNNSNTFLEPMQCDATSFSWKSVMDSYENCLLGSKEPESNLIAPAASSADDTTIFECLSEFDFDVPTMLFSDSSIEELLNCEEAICNNPLNNGSSSVLELSSENNKMEMMENISNPMNFTKNLAWFEARNNLTQPVPDLDTTNKIKRKKVQLGLVMDDSHSIKLGETILVPPRKKEEPKKPSKKKDKAGVGSRPRPKDRQRIQDCIRQLRTIIPGKNVKECSIDNLLECSIRYMSFLSSTAHYANKLQEPDKPKANGVVLQESSVEGSKYCGTWSFEEPHQTLLCPIIVEDMSHPGQMLIELLCEEEGFSLEMVDTIKGLGLNILKAKMETRNKKLWARFIVEVFIVQQANRHVTKIDVFWSLLHLVEQKNSSGTGMDSSTNNNKYCNVMNDSSVSRLDKQQQEKESCNLFMSRTE* 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g0758 1166 Gene3D - 541 630 - -
Ahy11g0758 1166 MobiDBLite consensus disorder prediction 919 951 - -
Ahy11g0758 1166 CDD RNase_HI_RT_Ty3 399 514 - -
Ahy11g0758 1166 Pfam Integrase zinc binding domain 576 630 IPR041588 -
Ahy11g0758 1166 Gene3D - 170 305 IPR043128 -
Ahy11g0758 1166 MobiDBLite consensus disorder prediction 1145 1166 - -
Ahy11g0758 1166 CDD RT_LTR 129 305 - -
Ahy11g0758 1166 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 936 987 IPR011598 GO:0046983
Ahy11g0758 1166 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 90 230 - -
Ahy11g0758 1166 MobiDBLite consensus disorder prediction 915 951 - -
Ahy11g0758 1166 SUPERFAMILY DNA/RNA polymerases 69 499 IPR043502 -
Ahy11g0758 1166 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 146 305 IPR000477 -
Ahy11g0758 1166 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN 67 608 - -
Ahy11g0758 1166 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 67 608 - -
Ahy11g0758 1166 Pfam RNase H-like domain found in reverse transcriptase 368 462 IPR041577 -
Ahy11g0758 1166 Gene3D - 314 408 IPR043128 -
Ahy11g0758 1166 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 126 305 IPR000477 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g0758 Ahy-Chr11 13352136 13363668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g0758 901 1124 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 40.351 9.97e-40 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g0758 - - ahf:112721003 2315.04