Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g0745 ATGGAGGAAGCAATGGCGGCAAGGTATTGGTGTCATATGTGCTCACAAATGGTGAATCCCATAACTGAAGGCGAGATCAAATGCCCATTATGCCAGAGCGGGTTTGTTGAAGAAATGAGTAACACCACTACTGTTAGCAATATGCTGGAAGCTCCTGATTTCGGCCCTGACCGGACACTTTCCCTTTGGGCTCCCATATTGTTAGGCATGTTGAGCAATCCGCATAATCGTCGAAGGCCTAGGCGATTAGAGCTCGATGATGATGATAACGACAACCATGATGATCATAATGGTAGTGGTAATAATGGTAATGCTACAAATAATGGTAATGGTAACAGCAACGATAATGGTAATGGTAATGGTAATGCTTTTGCGCGCCTTGGTGGAGAAAACGAATATGATCGTGAGCTCGAGTCTATCCTTCGGAGAAGAAGGAGAAGCTCAGCTACCATACTTCAATTGCTCCAAGGCATTAGAGCTGGCCTGGCATCTGAACTGAATGAGAACACTGATGGTGATGGCAATGGTAGGGAAAGAGAAAGAGAAAGAGACAGAGAGCGTGTAATCTTGATCAATCCTTTTAATCAAACTATTATTGTTCAAGGTTCCTATGACTGGAACCGCGGTCAAGGTGATAATCATACACCCATTGGTTCTCTGGGTGACTATTTCATTGGTCCTGGTTTGGATTTACTGTTGCAACATTTGGCCGAGAATGATCCCAATAGGCACGGAACTCCACCTGCGCAGAAGGAGGCCATTGAAGCATTGCCTACCGTGACAATTGACGAGAATATGCAATGTTCTATTTGCCTTGATGATCTTGAAGTTGGTTCTGAAGCCAAACAGATGCCCTGTAAACATATGTTTCATAGTGGATGTATCCTTCCTTGGTTGGAGCTCCATAGTTCTTGTCCAGTTTGCAGGTATCAGTTGCCCGCTGATGAATCTAAGCGCGAACCGGATGCGTCCTTGAGGACTAGCAGTAATCAAAGGGAGGATGAAAATACTGGACATGACAATGTTGATGGGGATATTGAAGGAAGAAATGCAAGTGGGAGTAGAAGATTCTCCTTTCCATGGCCTTTCAATGGTTTATTTTCTTCACCAAACCCTTCAGCAGCATCTTCTTCTAGCAACAATCCAAATGGAGATAATGTTACTCGATCAGAAGAGAACTGA 1182 0.4408 MEEAMAARYWCHMCSQMVNPITEGEIKCPLCQSGFVEEMSNTTTVSNMLEAPDFGPDRTLSLWAPILLGMLSNPHNRRRPRRLELDDDDNDNHDDHNGSGNNGNATNNGNGNSNDNGNGNGNAFARLGGENEYDRELESILRRRRRSSATILQLLQGIRAGLASELNENTDGDGNGRERERERDRERVILINPFNQTIIVQGSYDWNRGQGDNHTPIGSLGDYFIGPGLDLLLQHLAENDPNRHGTPPAQKEAIEALPTVTIDENMQCSICLDDLEVGSEAKQMPCKHMFHSGCILPWLELHSSCPVCRYQLPADESKREPDASLRTSSNQREDENTGHDNVDGDIEGRNASGSRRFSFPWPFNGLFSSPNPSAASSSSNNPNGDNVTRSEEN* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g0745 393 SMART ring_2 268 308 IPR001841 -
Ahy11g0745 393 SUPERFAMILY RING/U-box 258 316 - -
Ahy11g0745 393 MobiDBLite consensus disorder prediction 97 121 - -
Ahy11g0745 393 MobiDBLite consensus disorder prediction 77 96 - -
Ahy11g0745 393 MobiDBLite consensus disorder prediction 368 393 - -
Ahy11g0745 393 MobiDBLite consensus disorder prediction 316 353 - -
Ahy11g0745 393 MobiDBLite consensus disorder prediction 74 127 - -
Ahy11g0745 393 ProSiteProfiles Zinc finger RING-type profile. 268 309 IPR001841 -
Ahy11g0745 393 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 366 - -
Ahy11g0745 393 MobiDBLite consensus disorder prediction 316 350 - -
Ahy11g0745 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 366 - -
Ahy11g0745 393 CDD RING-H2_RNF126_like 267 309 - -
Ahy11g0745 393 Pfam Ring finger domain 267 309 IPR001841 -
Ahy11g0745 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 315 IPR013083 -
Ahy11g0745 393 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Ahy11g0745 393 MobiDBLite consensus disorder prediction 368 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g0745 Ahy-Chr11 12786442 12788885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g0745 175 315 C3H Transcription Factor Family AT1G26800 40.559 1.47e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g0745 K11982 - gmx:100784876 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g0745 11 12786442 12788885 Ahy11g0745 11 12786442 12788885 ECH