Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g0612 ATGCCCATGATTCTTCCTATATCTTCATCCTTAAATGAACAGATGGAATCGGATCTTGGCAAACTCTTCATTGGAGGGATATCTTGGGACACCGATGAGGAACGTCTCAAGGAATATTTTGGAAAATATGGGGAGGTTATAGAGGCTGTGATCATGAGAGATCGCACCACTGGTCGTGCTCGTGGTTTCGGCTTTGTTGTCTTTGCTGATCCTGCTGTTGCTGAGAGAGTCATTGTGGATAAGCACATAATCGATGGCCGCACGGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAGCAGTCCATAAATAGACAGTCCGGTAGTGCAAATGCCTCTCCTGGTCCTGGGCGCACGAAAAAGATCTTTGTTGGAGGTTTGCCATCAACTATCACAGAAAGCGATTTCAAGAAGTATTTTGATCAGTTCGGTACAATTACTGATGTTGTAGTAATGTATGATCACAATACTCAAAGGCCAAGAGGTTTTGGCTTCATCACATTTGATTCGGAAGAAGCTGTGGATCGAGTTCTTTATAAAACTTTTCATGAACTGAATGGAAAGTTGGTCGAAGTCAAGAGAGCAGTTCCGAAAGAGCTATCCCCTGGCCCCAGCCGAAGTCCATTGATAGGATATAACTATGGTATAAATAGGGCCAGTAGCTATCTAAACAACTACGCTCAGGGTTATAGTATGAGTCCAATAGGAGGATATGGCGTCAGGATGGATGGTAGGTTTAGTCCTCTTACTAGTGGTAGAAGCGGGTTTACTCCATTCGGCAACACTGCTTATGGAATGGGAGTGAATCTTGAGTCAGGATTGAGCCCAAGCTATGGAGGAACTTCTAGTTACGGGAGCAATATAGGATACGGTCGAATATTTAGTCCTTTCTACAGTGGAAACTCGAGCAGATACACCACTCCTATAGGCTATAGTGGGGGAAATAGCAGAAGCGACTCTATTATGAACTCACCTTCTCGAAATGTCTGGGGAAATGGAGTCCTGAATAACGCTAATAACGCAGTCAGTCCTGGTTCTTTCTTGGGATCTGGAAGTGGGAGCTTTGGTGTTTCAATTGGAAATAGTGGTGCTAATTGGGGTCCATCTATTCCATCCCAAGCCGGAGGAGCTGCTTCGGGCTATGCTACGGGGAATAATGTTTATGAAGGTGGAGAATCCGGCTTTGGGTTAGGTGGGGGAGGGTATGGAAGAAACAGTGGTACGGGTATGACTCCATCCTCTACATTCGCTGCATCAACTGGTAGTTTTGAAGGATCCTATGGGGATTTATACCGAACTGGCAGTGGTTCAGTTTACAATGACTCTGCTTGGCGAACCGCTTCTTCTGAGATGGATGGTTCTGGCTCTTTTGGTTATGGTCTTGGTGTTATTGCTTCAGACGACCCTGTAAAGACTTCTGAGGGTTATATTGGAAGCTACAATGTTACAAGTAGACAATCTAATAGAGGAATTGCTGCTTAG 1482 0.448 MPMILPISSSLNEQMESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQQSINRQSGSANASPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLYKTFHELNGKLVEVKRAVPKELSPGPSRSPLIGYNYGINRASSYLNNYAQGYSMSPIGGYGVRMDGRFSPLTSGRSGFTPFGNTAYGMGVNLESGLSPSYGGTSSYGSNIGYGRIFSPFYSGNSSRYTTPIGYSGGNSRSDSIMNSPSRNVWGNGVLNNANNAVSPGSFLGSGSGSFGVSIGNSGANWGPSIPSQAGGAASGYATGNNVYEGGESGFGLGGGGYGRNSGTGMTPSSTFAASTGSFEGSYGDLYRTGSGSVYNDSAWRTASSEMDGSGSFGYGLGVIASDDPVKTSEGYIGSYNVTSRQSNRGIAA* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g0612 493 Gene3D - 100 208 IPR012677 -
Ahy11g0612 493 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 15 493 - -
Ahy11g0612 493 SUPERFAMILY RNA-binding domain, RBD 119 207 IPR035979 GO:0003676
Ahy11g0612 493 SUPERFAMILY RNA-binding domain, RBD 5 117 IPR035979 GO:0003676
Ahy11g0612 493 MobiDBLite consensus disorder prediction 100 114 - -
Ahy11g0612 493 MobiDBLite consensus disorder prediction 92 119 - -
Ahy11g0612 493 CDD RRM1_hnRNPA_hnRNPD_like 22 92 - -
Ahy11g0612 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 96 IPR000504 GO:0003723
Ahy11g0612 493 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 15 493 - -
Ahy11g0612 493 SMART rrm1_1 121 193 IPR000504 GO:0003723
Ahy11g0612 493 SMART rrm1_1 21 92 IPR000504 GO:0003723
Ahy11g0612 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 89 IPR000504 GO:0003723
Ahy11g0612 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 181 IPR000504 GO:0003723
Ahy11g0612 493 Gene3D - 20 99 IPR012677 -
Ahy11g0612 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Ahy11g0612 493 CDD RRM2_DAZAP1 118 197 IPR034131 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g0612 Ahy-Chr11 9646910 9651381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g0612 19 194 Eukaryotic Initiation Factors Gene Family AT2G23350 25.281 3.24e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g0612 K14411 - gmx:100805131 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g0612 11 9646910 9651381 Ahy11g0612 11 9646910 9651381 ECH