Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g0493 ATGAAGATCACTGTCATGACTGCTGATGAACAAATTCTCACTTTGGATGTCGATCCTCACGAATCTGTGGAAAACGTCAAGGCATTGCTGGAGGTTGAGACAAGTGTCCCTATTCAGCAACAGCAACTACTCTTCAATGGGAAGGAGATTAGGAATTCTGACAAGTTAAGTGCCATAGGCGTGAAGGATGACGATTTGCTTATGATGGTCTCCGGTGGTGGCAGTGGCGGCGGCGGTGGCGGCGGTGCTGCTAGTGGAACTGCCAATGAATTGAGTTTAAATGCCGATGGATCCGCTGTAAACCCCAGTGCTTTCCAGCAGCACATAAGACGTGATTCTAATTTGATAGGTCAGCTCTTTCAGAGTGATCCGGAGTTGGCGCAAGCTATTCTTGGGAATGATCTTAACAGATTGCAGGAAGTTTTGCGAATGCGTCATCGCCAAAGGGAAGAACTACAGCGTCAGAAAGAAGAAGAGCTTGCTCTTCTCTATGCGGATCCTTTTGATGTTGAAGCCCAAAGAAAGATTGAAGCTGCCATTCGCCAAAAAGGAATTGATGAAAACTGGGCAGCTGCACTGGAACATAATCCTGAAGCCTTTGCTAGAGTGGTTATGCTTTATGTTGATATGGAGGTTAATGGTGTCCCATTGAAGGCATTTGTCGATAGTGGAGCCCAATCTACCATTATATCAAAAAGTTGTGCCGAGCGCTGTGGATTGTTGAGACTCTTAGATCAGCGATACAAAGGTATTGCTCATGGAGTTGGTCAATCAGAAATATTAGGTCGAATACATGTAGCTCCAATCAAGATTGGGAGTATATTTTACCCTTGCTCATTCTTAGTTCTGGATTCTCCCAATATGGAGTTCCTTTTTGGGCTTGATATGCTCCGAAAGCACCAGTGTATAATCGATTTAAAAGATAATGTTTTACGAGTTGGTGGTGGAGAAGTTTCAGTGCCATTTTTGCATGAGAAAGACATACCGTCACGGTTTCTTGATGAGGAAAAGTTTAAGGAGGCTTCAAGCTCTGGCGCACAAGTTACATCAGGGGGCAATAATCCATCACCAAGGGGCCAGTCTTCTGGGGGAGCTTCTGGCGACAAGTCTAAGGATTCTGAATTTGAAGCCAAAGTTGCAAAGCTTGTTGAGTTAGGATTTGGAAGAGCTGCAGTAATAGAAGCTCTTCAATTATTTAATGGCAATGAGGAACAAGCAGCAGGATTTCTTTTTGGGGGCTGA 1242 0.4444 MKITVMTADEQILTLDVDPHESVENVKALLEVETSVPIQQQQLLFNGKEIRNSDKLSAIGVKDDDLLMMVSGGGSGGGGGGGAASGTANELSLNADGSAVNPSAFQQHIRRDSNLIGQLFQSDPELAQAILGNDLNRLQEVLRMRHRQREELQRQKEEELALLYADPFDVEAQRKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKDNVLRVGGGEVSVPFLHEKDIPSRFLDEEKFKEASSSGAQVTSGGNNPSPRGQSSGGASGDKSKDSEFEAKVAKLVELGFGRAAVIEALQLFNGNEEQAAGFLFGG* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g0493 413 SMART uba_6 375 412 IPR015940 -
Ahy11g0493 413 Gene3D - 343 413 - -
Ahy11g0493 413 Coils Coil 135 158 - -
Ahy11g0493 413 SUPERFAMILY UBA-like 363 413 IPR009060 GO:0005515
Ahy11g0493 413 PANTHER AT13091P 1 411 - -
Ahy11g0493 413 SMART ubq_7 1 72 IPR000626 GO:0005515
Ahy11g0493 413 Gene3D Acid Proteases 184 330 IPR021109 -
Ahy11g0493 413 SUPERFAMILY Acid proteases 191 306 IPR021109 -
Ahy11g0493 413 MobiDBLite consensus disorder prediction 343 372 - -
Ahy11g0493 413 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 370 413 IPR015940 -
Ahy11g0493 413 SUPERFAMILY Ubiquitin-like 1 72 IPR029071 -
Ahy11g0493 413 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Ahy11g0493 413 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 411 - -
Ahy11g0493 413 Gene3D - 1 75 - -
Ahy11g0493 413 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Ahy11g0493 413 Pfam UBA/TS-N domain 376 409 IPR015940 -
Ahy11g0493 413 Pfam Aspartyl protease 183 305 IPR019103 GO:0004190|GO:0006508
Ahy11g0493 413 PRINTS Ubiquitin signature 32 52 IPR019956 -
Ahy11g0493 413 PRINTS Ubiquitin signature 11 31 IPR019956 -
Ahy11g0493 413 MobiDBLite consensus disorder prediction 343 368 - -
Ahy11g0493 413 CDD UBA_scDdi1_like 376 411 - -
Ahy11g0493 413 CDD RP_DDI 190 313 IPR019103 GO:0004190|GO:0006508
Ahy11g0493 413 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g0493 Ahy-Chr11 7054389 7060325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g0493 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 6.33e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g0493 K11885 - gmx:100779464 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g0493 11 7054389 7060325 Ahy11g0493 11 7054389 7060325 ECH