Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ahy11g0437 | ATGTCTTACTCAAGGAGATCAAGGTATTCTCCTTCTCCTTCTCCATCCCCATACAAGGGGTACAGCAGGTACAGCAGGTCCTTATCCAGGTCTCTTTCAAGGTCAAGATCGAGAAGCCGTTCAAGGAGCGTCTCAAGTGATGCAGAAAATCCTGGAAATAACTTGTATGTGACTGGATTATCTCCTAGGATCACCAAGAGAGAACTGGAGAAGCATTTTGCAGCTGAAGGAAAGGTCATAGATGTACATCTTGTAGTTGATCCGTGGACAAGAGAATCACGTGGGTTTGGCTTTGTGACAATGGCAAATCTTGAGGATGCTGATCGGTGTGTGAAATATTTAAACCGCTCTGTACTTGAAGGGCGTGTAATCACAGTGGAGAAGGCCAGAAGGCGACGTGGCCGAACCCCAACGCCTGGAAGATATCTTGGGCTAAGGACTATTCGAGCACGCCGTCACTCACGCTCCCCAAGCTACTCTTCTCGGCGCTCTCCTAGCTATTCCCCCTACCGAAGAAGCTATAGTCGTTCGCCATATTCTCCAGATCGTAGTAGGAGTCCCTCTTATTCTCCTGACTATCGCCGTAGAAGGTCTTACTCTCCTGACTACCGGCGAAGGAGGTCTTACTCTCCATATTACTACAGTCGACGCAGGTCCCCATATTCTCCATATTATAGTCGTCGCAGGTCGTATTCGCGATATGATCGTTATGAGCGGCGGAGGTCATATTCGCGGTCTCAATCCCCATACAGCAGGTCACCTGTCAGTTATCGTGACAGATCATACTCTCCCTATGACTCAAGGTATGACTCGCCCGATGATCGCTATTACAGAAGGCACCACAACAGGTCAGTTTCTCCAAGTGTCTCCCCTCCCCCAAGGCGGAGGTCGAGGAGAAGCTACTCGCGGAGTGTCACTCCTGTTCGAATGAGGAGCTGCTCTCGAAGCATCTCTCCCCGACGCAGCAGGAGGAGCTACTCACGAAGTGTTTCTCCACCAAGGAAAAGTTCTGGGAGGAGCCATTCAAGAAGCTCTAAAAGGAGTGGTGGTTATTCCAAACGTAGTAGGAGCCCAAGTCCAAGTGTGAGTGCAAGTTCAAGATCATTTTCAAGGTCCAACACTCCTGGATCTGCTTCTCCTTCAACTTAG | 1149 | 0.4961 | MSYSRRSRYSPSPSPSPYKGYSRYSRSLSRSLSRSRSRSRSRSVSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMANLEDADRCVKYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTIRARRHSRSPSYSSRRSPSYSPYRRSYSRSPYSPDRSRSPSYSPDYRRRRSYSPDYRRRRSYSPYYYSRRRSPYSPYYSRRRSYSRYDRYERRRSYSRSQSPYSRSPVSYRDRSYSPYDSRYDSPDDRYYRRHHNRSVSPSVSPPPRRRSRRSYSRSVTPVRMRSCSRSISPRRSRRSYSRSVSPPRKSSGRSHSRSSKRSGGYSKRSRSPSPSVSASSRSFSRSNTPGSASPST* | 383 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ahy11g0437 | 382 | MobiDBLite | consensus disorder prediction | 229 | 245 | - | - | |
Ahy11g0437 | 382 | MobiDBLite | consensus disorder prediction | 323 | 338 | - | - | |
Ahy11g0437 | 382 | MobiDBLite | consensus disorder prediction | 246 | 260 | - | - | |
Ahy11g0437 | 382 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 55 | 124 | IPR000504 | GO:0003723 | |
Ahy11g0437 | 382 | MobiDBLite | consensus disorder prediction | 159 | 187 | - | - | |
Ahy11g0437 | 382 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 | 205 | 289 | - | - | |
Ahy11g0437 | 382 | PANTHER | TRANSFORMER-2-RELATED | 10 | 222 | - | - | |
Ahy11g0437 | 382 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 | 10 | 222 | - | - | |
Ahy11g0437 | 382 | SUPERFAMILY | RNA-binding domain, RBD | 42 | 158 | IPR035979 | GO:0003676 | |
Ahy11g0437 | 382 | CDD | RRM_RBMX_like | 52 | 129 | - | - | |
Ahy11g0437 | 382 | MobiDBLite | consensus disorder prediction | 44 | 59 | - | - | |
Ahy11g0437 | 382 | MobiDBLite | consensus disorder prediction | 130 | 382 | - | - | |
Ahy11g0437 | 382 | MobiDBLite | consensus disorder prediction | 351 | 382 | - | - | |
Ahy11g0437 | 382 | PANTHER | TRANSFORMER-2-RELATED | 205 | 289 | - | - | |
Ahy11g0437 | 382 | MobiDBLite | consensus disorder prediction | 1 | 59 | - | - | |
Ahy11g0437 | 382 | SMART | rrm1_1 | 54 | 127 | IPR000504 | GO:0003723 | |
Ahy11g0437 | 382 | MobiDBLite | consensus disorder prediction | 263 | 281 | - | - | |
Ahy11g0437 | 382 | Gene3D | - | 5 | 137 | IPR012677 | - | |
Ahy11g0437 | 382 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 53 | 131 | IPR000504 | GO:0003723 | |
Ahy11g0437 | 382 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ahy11g0437 | Ahy-Chr11 | 5938827 | 5942208 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ahy11g0437 | 54 | 158 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 29.524 | 1.08e-07 | 52.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ahy11g0437 | - | - | adu:107494646 | 213.772 |