Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g0273 ATGGCTAGAAAGAAAGTGGAGTTCAAATACATAGCAAATGACTCAAAGAGGAAGGCAACACAAAAAAAACGGAAAAGTGGTCTGACAAAAAAGGTTGATGAGATTAGCACTCTTTGCGGAGTTGATGCGTGTGCTATAATTTATACCCCTGATGAACCACGGCCAGAGGTATGGCCGTCGCCATTAGAGGTGAACCGAGTGATCTCTAGATTTAAGGAAATGCCTGAATTAGATCAAAGTAAGAAAATGATGTCTCAAGAGAGCTTCTTGAGACAAAGGATCCAGAAAGGCCAAGATCAACTAAAGAAACTAAAAAATGAGAATAGAAAGAAAGAGATGAACAATCTCATGTTTCAATCCTTAGGTGGCTACCAATCCCTTGACAATGCCACCATGATTGATCTCAATGATCTTGCATGGATCATTGATCAAAATATCAAGGAGGTCAACAAGCAAATTAGCAAGCTTCAAGGGCAAGAAGGGACTAGTAGTAATAATAATAGAGTAGCAACCATCAATGAAGAGCAAGCTCAAGTGGACAATATCATCAACGATGGTGTGTTTTCATTTGTGGATGCTGCTAATAATTTCCAAAATGATTATCGCCCAACTCCATTTAATCCTTGA 627 0.3892 MARKKVEFKYIANDSKRKATQKKRKSGLTKKVDEISTLCGVDACAIIYTPDEPRPEVWPSPLEVNRVISRFKEMPELDQSKKMMSQESFLRQRIQKGQDQLKKLKNENRKKEMNNLMFQSLGGYQSLDNATMIDLNDLAWIIDQNIKEVNKQISKLQGQEGTSSNNNRVATINEEQAQVDNIINDGVFSFVDAANNFQNDYRPTPFNP* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g0273 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 169 - -
Ahy11g0273 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Ahy11g0273 208 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Ahy11g0273 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy11g0273 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy11g0273 208 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 169 - -
Ahy11g0273 208 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Ahy11g0273 208 Coils Coil 87 114 - -
Ahy11g0273 208 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Ahy11g0273 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy11g0273 208 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g0273 Ahy-Chr11 3030141 3030839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g0273 1 170 Type I MADS-box Gene Family AT5G48670 51.163 3.39e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy11g0273 SRF-TF 1.30E-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g0273 - - aip:107644294 357.836