Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g0248 ATGTCGTATGTGCCTCCACACCTCAGAAACTCAACCACCACAACAACAACCACTACCACCACCACCACGACGGCGAAAACCTCCTCCGTAACCCAAGAAAACAACAACGACAATATCAGCAACAATGTTAACCATCAAACTAAGCTCGCATTCCCTTCTTATTCAAACTCACACTCTCACTCTCACTCCAACGGCACCAATGGAACCAATGGCAACGCCAACAACCACAATTCTGTGTCCCATGGTTCTCGCCGCCCCACCGCCACTCCGCAGCCGTCACGGATTTTCGCAGCTCCCGAGCCAGTTTTCCCTCACTGGCAGCCATCCGAGCGCGTTTCACGCATGAGCCCCGACCAGATTGAAGAGGTCCGCCTCCGACTTAACCTTGATGTCACTATTGCATCAGACTCTCCAGCTGCTCCTGCACCAATTGAATCATTTAGTGATATGTGTGTCCATCCAAGTATCATGAAGGATATTGCATATCATGAATACACCAGGCCAACTTCTATCCAGGCACAGGCCATGCCAATTGCTCTCAGTGGAAGGGATCTACTTGGCTGTGCTGAAACTGGTAGTGGGAAAACTGCAGCTTTCACAATTCCTATGATACAGCATTGCATGGCTCAATCTCCTATTCGGCGTGGTGATGGTCCTCTGGCATTAGTTTTGGCTCCTACTAGAGAACTTGCTCAACAAATAGAGAAAGAGGTTAAAGCTTTTAGCAGATCTCTCGAGTCATTGAAAACTGCCATAGTTGTGGGTGGAACTAACATTGAAAAGCAGATAATGAGAAATCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCCACTATGCCTGTGGAGATTGAAGCATTATCAAAGGAATACTTGGCTAATCCTGTACAAGTGAAAGTTGGAAAAGTCAGTAGCCCAACAACAAATGTTTCACAAACACTTGTGAAGGTCTCTGAAAATGAGAAGATTGATCGACTTCTAGATTTGCTTGTAGAAGAGGCGTCACAGGCTGAAAAATGTGGTCATCCATTTCCACTAACAATAGTGTTTGTTGAAAGAAAGACGAGATGTGATGAAATTGCTGAAGCACTTGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGCCGCAGTCAAAGTGAAAGAGAGGCTGCCCTGCATGACTTTCGGAGTAGCACCACCAACATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACAGGAGTGTCGCATGTCATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACATCGGATTGGAAGGACAGGGCGTGCAGGAACAACAGGCCTATCGACTTCATTCTACACTGATCGTGACATGTTCCTCGTTGCAAATATAAGGAAAGCAATTGCTGATGCTGAATCTGGGAACACAGTGGCATTTGCAACTGGAAAGGTTGCTAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACAAAAAGAGGCAAATATTGCTTTATCCAAACACTTTGGATTGGGACCTGCTTCAATTAACATCGAAGATAAATATAGATTTATGATTACTACCTCAAACATTAAAAAGGTAGGCGCAGCTGATAGTGCTTGGGATGATTAG 1611 0.4531 MSYVPPHLRNSTTTTTTTTTTTTTAKTSSVTQENNNDNISNNVNHQTKLAFPSYSNSHSHSHSNGTNGTNGNANNHNSVSHGSRRPTATPQPSRIFAAPEPVFPHWQPSERVSRMSPDQIEEVRLRLNLDVTIASDSPAAPAPIESFSDMCVHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCMAQSPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQIMRNLPEKHQTLLFSATMPVEIEALSKEYLANPVQVKVGKVSSPTTNVSQTLVKVSENEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKTRCDEIAEALVAQGLSAVSLHGGRSQSEREAALHDFRSSTTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGTTGLSTSFYTDRDMFLVANIRKAIADAESGNTVAFATGKVARRKEKEAAAAQKEANIALSKHFGLGPASINIEDKYRFMITTSNIKKVGAADSAWDD* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g0248 536 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 176 298 IPR014001 -
Ahy11g0248 536 Gene3D - 105 264 IPR027417 -
Ahy11g0248 536 Coils Coil 480 500 - -
Ahy11g0248 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 459 IPR027417 -
Ahy11g0248 536 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 261 501 - -
Ahy11g0248 536 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 58 262 - -
Ahy11g0248 536 Gene3D - 306 498 IPR027417 -
Ahy11g0248 536 Coils Coil 231 251 - -
Ahy11g0248 536 SMART helicmild6 358 439 IPR001650 -
Ahy11g0248 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 265 IPR027417 -
Ahy11g0248 536 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 480 IPR001650 -
Ahy11g0248 536 CDD SF2_C_DEAD 310 448 - -
Ahy11g0248 536 CDD DEADc 156 299 - -
Ahy11g0248 536 MobiDBLite consensus disorder prediction 1 95 - -
Ahy11g0248 536 MobiDBLite consensus disorder prediction 1 90 - -
Ahy11g0248 536 Gene3D - 265 305 IPR027417 -
Ahy11g0248 536 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 261 501 - -
Ahy11g0248 536 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 58 262 - -
Ahy11g0248 536 Pfam DEAD/DEAH box helicase 169 263 IPR011545 GO:0003676|GO:0005524
Ahy11g0248 536 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 145 173 IPR014014 GO:0003724
Ahy11g0248 536 Pfam Helicase conserved C-terminal domain 322 439 IPR001650 -
Ahy11g0248 536 SMART ultradead3 164 313 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g0248 Ahy-Chr11 2606946 2615057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g0248 143 461 Eukaryotic Initiation Factors Gene Family AT3G19760 30.133 1.43e-44 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g0248 K12823 - gmx:100787545 768.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g0248 11 2606946 2615057 Ahy11g0248 11 2606946 2615057 ECH