Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g0235 ATGGGGAGAAGACCAGCGAGGTGTTACAGGCAAATCAAGAACAAGCCATATCCAAAATCGCGATTCTGCAGGGGTGTGCCTGACCCTAAGATCCGAATCTATGACGTCGGAATGAAGAAGAAGGGTGCGGATGAGTTTCCGTTCTGCGTGCACCTTGTTTCATGGGAGAAGGAGAATGTTTCCAGTGAGGCACTTGAGGCTGCTCGCATTGCTTGCAACAAGTACATGTCCAAATTCGCAGGCAAAGACGCTTTCCATTTGCGTGTTAGGGTTCATCCTTTCCATGTTCTCCGTATCAACAAGATGCTCTCCTGCGCCGGCGCCGACAGGCTCCAGACTGGCATGAGGGGCGCCTTTGGCAAGCCGCAGGGCACTTGCGCTAGGGTGAACATTGGCCAGGTACTTCTCTCGGTTCGCACCAAGGATAACCATGGTCATCATGCTCAGGAGGCTCTGCGACGCGCCAAGTTCAAGTTCCCCGGCCGCCAGAAGATCATTGTCAGCAGGAAGTGGGGATTTACAAAGTTCAACCGAACAGAGTATTTGAAGTTAAAGTCTGAGAACAGAATTGTGCCTGATGGTGTCAATGCCAAGCTTCTTGGGTGCCATGGACCTTTGGCAAATCGTAAACCTGGACAAGCTATCTTGCCAGCTACTGCTAGTGCTTAG 669 0.5157 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGADEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVNIGQVLLSVRTKDNHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRTEYLKLKSENRIVPDGVNAKLLGCHGPLANRKPGQAILPATASA* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g0235 222 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Ahy11g0235 222 Gene3D Ribosomal protein L10e/L16 1 216 IPR036920 GO:0003735|GO:0005840|GO:0006412
Ahy11g0235 222 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 219 - -
Ahy11g0235 222 PANTHER 60S RIBOSOMAL PROTEIN L10 1 219 IPR001197 GO:0003735|GO:0005840|GO:0006412
Ahy11g0235 222 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Ahy11g0235 222 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Ahy11g0235 222 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Ahy11g0235 222 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Ahy11g0235 222 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g0235 Ahy-Chr11 2445753 2448282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g0235 1 221 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 87.330 1.34e-145 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g0235 K02866 - gmx:100779884 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g0235 11 2445753 2448282 Ahy11g0235 11 2445753 2448282 ECH