Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g0176 ATGGAGCTTCCCCATCAAAGTCAAAGTGGTGGAGGTGGTGATGCTCATCGTATTGATCATGAAGGATCTTCATCTCAGAAGAGAATGGGAAGAGGGAAGATCGAGATAAAGCGAATCGAGAACACGACCAATCGGCAGGTGACGTTCTGTAAGAGGCGGAACGGTTTGCTGAAGAAAGCTTATGAACTGTCTGTGCTTTGTGATGCTGAAGTCGCTCTTGTTGTCTTCTCCAGCCGTGGCCGTTTGTATGAGTATGCTAACAACAGTGTTAGGGCAACAATTGAAAGGTATAAAAAAGCATATTCTACTTCCACAAGCGCAGAATCTGTGTCTGAAGCTAACACGCAGTATTACCAGCAAGAATCAACCAAATTGAAAAGACAAATCCGAGAGATTCAAAATTTAAACAGGCACATCCTTGGTGAAGCACTCAGCACTCTAAGCCTTAAGGAACTAAAGAACCTTGAAAGCAGATTGGAGAAAGGCTTAAGCAGAGTCAGATCCAGAAAGCATGAAACATTGTTAGCTGAAGTTGAATTCATGCAAAAACGGGAAATTGAGCTGCAAAACCACAACAATTTTCTGAGAGCAAAGATAGGTGAATTTGAGAGAGCTCAACAACAACAACAACATCAACATGAACAAAATTTTTTAATGGCACCTGGTGGAGGAACTATATGTGACACAATTGCATCTTCACAACAACCACCACCACCATTTGATCGCAACTTCTTTTAG 738 0.4187 MELPHQSQSGGGGDAHRIDHEGSSSQKRMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRATIERYKKAYSTSTSAESVSEANTQYYQQESTKLKRQIREIQNLNRHILGEALSTLSLKELKNLESRLEKGLSRVRSRKHETLLAEVEFMQKREIELQNHNNFLRAKIGEFERAQQQQQHQHEQNFLMAPGGGTICDTIASSQQPPPPFDRNFF* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g0176 245 MobiDBLite consensus disorder prediction 1 35 - -
Ahy11g0176 245 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 21 211 - -
Ahy11g0176 245 Coils Coil 118 138 - -
Ahy11g0176 245 Gene3D - 41 122 IPR036879 GO:0003677|GO:0046983
Ahy11g0176 245 SUPERFAMILY SRF-like 30 107 IPR036879 GO:0003677|GO:0046983
Ahy11g0176 245 CDD MADS_MEF2_like 30 99 IPR033896 GO:0000977|GO:0045944
Ahy11g0176 245 Pfam K-box region 113 199 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy11g0176 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 38 85 IPR002100 GO:0003677|GO:0046983
Ahy11g0176 245 MobiDBLite consensus disorder prediction 14 35 - -
Ahy11g0176 245 ProSiteProfiles MADS-box domain profile. 29 89 IPR002100 GO:0003677|GO:0046983
Ahy11g0176 245 PRINTS MADS domain signature 51 66 IPR002100 GO:0003677|GO:0046983
Ahy11g0176 245 PRINTS MADS domain signature 66 87 IPR002100 GO:0003677|GO:0046983
Ahy11g0176 245 PRINTS MADS domain signature 31 51 IPR002100 GO:0003677|GO:0046983
Ahy11g0176 245 SMART madsneu2 29 88 IPR002100 GO:0003677|GO:0046983
Ahy11g0176 245 ProSitePatterns MADS-box domain signature. 31 85 IPR002100 GO:0003677|GO:0046983
Ahy11g0176 245 Coils Coil 149 169 - -
Ahy11g0176 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 21 211 - -
Ahy11g0176 245 ProSiteProfiles K-box domain profile. 115 205 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g0176 Ahy-Chr11 1799942 1808767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g0176 20 245 MADS-box Gene Family AT2G42830 66.228 4.48e-103 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy11g0176 K-box 1.20E-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g0176 K09264 - gmx:100808734 334.339