Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g0076 ATGAGTTCCTTCTCCATCACACGGAAAAAGACACCATTCCAGAAGCACAGAGAAGAGGAGGAGGCAAAGAAGAAGAGAGCTGAAGATGAGACTGCTCGTTTGTATGCCGAATTTGTAGAGTCATTTCAAGGTGATACCACTCCTGGGTCAAAGGCTTTTGTACGAGGAGGAACAATTAATCCCAATGATAAATTGAAGGATGATACTGAGGGTGAAAAGTCCAAAGATGGGGTTTCTGGTCCAAAGAAGGGAAGTAGGTATGTTCCATCTTTTATACCACCTCCAATGGCAACCAAGGGGAAAGAATCGGAAAGGAAAAAAGAGGAGGAAAAACCTAAGGACAAAGAGAAAGGAAAGTCGAGGAACATTGATCATTTCATGGAGGAGCTAAAGCACGAGCAAGAGATGAGGGAGAGGCGGAACCAAGAACGTGAAAATTGGCGTGATGGGCGCCACGGAGAACATTCCACTTCAAGTCGCTTTGACGAACTACCTGATGACTTTGATCCAAGTGGAAGACTTCCTGGATCATTTGATGATGGCGATCCCCAAACTACGAATCTGTATGTTGGAAACCTCTCACCCAAGGTTGATGAAAATTTTCTGCTCCGTACTTTTGGAAGATTTGGACCTATTGCCAGTGTGAAGATAATGTGGCCTAGGACAGAAGAGGAGCGAAGACGACAAAGAAACTGTGGCTTTGTGGCTTTCATGAACAGAGCTGATGGACAGGCTGCAAAGGATGAAATGCAAGGAGTTGTGGTTTATGAGTATGAATTGAAAATTGGGTGGGGAAAGTCTGTTGCGCTCCCATCGCAAGCCCTACCTGCACCCCCACCAGGGCATATGGCCATCAGGAGTAAGGAGGGTAGTACTGTTATCCTATCTGGTCCATCAGGCGGTCCACCTGTGACTTCTGTGCCTAATCAGAACTCTGAACTGGTCCTTACTCCTAATATTCCTGATATAATGGTTACACCTCCTGAGGATGAACATCTGAGGCATGTAATTGATACAATGGCTTTATATGTTCTGGATGGTGGGTGTGCTTTTGAACAAGCTATCATGGAGAGGGGTCGTGGAAATCCTCTTTTCAACTTCTTGTTTGTTCTTGGCTCAAAGGAACACACCTACTATGTTTGGAGACTCTACTCATTTGCCCAGGGTGATACTCTTCAACGATGGCGGACTGAACCTTTTATCATGATAACGGGTAGTGGAAGATGGATACCCCCCTCATTACCAACAGCAAAAAGTCCAGAACATGAGAAGGAGTCTGGTCCAACACATGCAGGAGGAAGAAGCAGGCGTGTAGAGCCTGAAAGAACACTGACTGATGCACAGAGGGACGAGTTTGAGGATATGCTGCGGGCTTTAACATTAGAGAGGAGCCAGATAAAAGAGGCCATGGGGTTTTCTTTGGATAATGCCGATGCAGCTGGCGAGATTGTTGAAGTTTTAACAGAATCATTGACGCTTAAAGAAACCCCCATTCCAACTAAAATTGCAAGGCTCATGCTTGTATCTGATATTCTTCACAATAGTAGTGCTCCTGTAAGAAACGCATCAGCATATCGCACCAAGTTTGAAGCAACATTACCTGACGTAATGGAGAGTTTTAATGACTTGTATCGTAGCATAATGGGGCGCATTACTGCTGAAGCACTTAAAGAACGAGTACTGAAAGTTTTGCAAGTGTGGGCCGATTGGTTCCTCTTTTCAGATGCTTATGTGAATGGCTTAAGAGCCACTTTTCTTCGACCTGGGAACTCCGGTGTTATACCCTTCCATTCCATATGTGGTGATGCTCCTGAGATCGAACAGAAGGCCACTTCCGAAGATATGGTTGGCGGCAAGGCCAACCAAGATGCTGCATTGGCAATGGGCCGAGGAGCTGCAACAAGGGAGCTAATGAGTTTGCCTCTTGCCGAGCTGGAAAGACGGTGCCGACACAATGGATTGTCACTTGTTGGTGGCAGAGAAATGATGGTTGCACGGTTGCTAAGTCTTGAAGAGGCAGAAAAGCAAAGGGGTTATGAACTGGATGACGAATTGAAATATGCTCAAAACCAAGCAAATGCAGGGAAGTATACAAGTACTCGGCGGGATACGAGTGCTGAGCCTGAACCAGCAGGATTATCTGGATGGAACCACTATTCGGATGAAGATTTGCCTTCACAAGGCAAAGGGTCTTCACCTTTAGCATCAACCCTTTCTATTCCACAGCCTGAACTTAAAGCCTTTACAAAAAAGGAGAAGAATGATCCAGTTTTGCCTGCCTCTAAATGGGCTCGAGAGGATGATGAGAGTGATGATGAGCATAGGAGGGATGGAAAGAATCTTGGGCTAAGCTACTCGTCTTCTGGTAGCGAGAATGTTGGAGACGGTCTTAGTAAAGCTGATGAACACGAGTCTGCTGCAGATACAAGTTTTTCAGCTCACACTGACAGTGGAATGAATGAAGAGCAGAGACAAAAGTTACGACGCTTGGAGGTTGCTCTAATTGAATATCGGGAGTCTCTTGAAGAGAGGGGAATTAAAAATTTGGAGGAAATTGAGAAGAAAGTTGAAGCACACCGGAAACGGCTGCAATCAGAGTACGGTTTATCAGATTCTGGCGAAGATGGTCAAGGCAATAGACGAACGTCTTCGGAGAGGAGGGATAGGCACGATGTCTCAAGGAAACGGCACCGCAGCCCGAGTCCAAGCCATAGTCCACATCAAAGATTATCAAGTCGAGATAGAGATAGAGAACATGATTTTGATAGGGAAAGAGACAGGCAAAGAGATAGAAGTCATGATTTCGACAGTGATAAAGGAAGGGACCGGCACCGCGAAAAGAGTGGAAGCCGAGAGAGGGATGATCATGACAGGGAAAGGAGCAGGGACAGAGATAGGGACCGGGACCGGAGAAGACGGACCAAATAA 2928 0.46 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDTTPGSKAFVRGGTINPNDKLKDDTEGEKSKDGVSGPKKGSRYVPSFIPPPMATKGKESERKKEEEKPKDKEKGKSRNIDHFMEELKHEQEMRERRNQERENWRDGRHGEHSTSSRFDELPDDFDPSGRLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGGPPVTSVPNQNSELVLTPNIPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPTAKSPEHEKESGPTHAGGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDVMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRPGNSGVIPFHSICGDAPEIEQKATSEDMVGGKANQDAALAMGRGAATRELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAQNQANAGKYTSTRRDTSAEPEPAGLSGWNHYSDEDLPSQGKGSSPLASTLSIPQPELKAFTKKEKNDPVLPASKWAREDDESDDEHRRDGKNLGLSYSSSGSENVGDGLSKADEHESAADTSFSAHTDSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIEKKVEAHRKRLQSEYGLSDSGEDGQGNRRTSSERRDRHDVSRKRHRSPSPSHSPHQRLSSRDRDREHDFDRERDRQRDRSHDFDSDKGRDRHREKSGSRERDDHDRERSRDRDRDRDRRRRTK* 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g0076 975 MobiDBLite consensus disorder prediction 692 824 - -
Ahy11g0076 975 PANTHER RNA PROCESSING PROTEIN LD23810P 5 970 - -
Ahy11g0076 975 MobiDBLite consensus disorder prediction 61 80 - -
Ahy11g0076 975 Coils Coil 820 840 - -
Ahy11g0076 975 Gene3D - 96 269 IPR012677 -
Ahy11g0076 975 ProSiteProfiles SAP motif profile. 637 671 IPR003034 -
Ahy11g0076 975 SMART cwf21_2 819 868 IPR013170 -
Ahy11g0076 975 MobiDBLite consensus disorder prediction 863 975 - -
Ahy11g0076 975 PANTHER - 5 970 - -
Ahy11g0076 975 Coils Coil 449 469 - -
Ahy11g0076 975 Gene3D - 819 870 - -
Ahy11g0076 975 Pfam cwf21 domain 820 866 IPR013170 -
Ahy11g0076 975 Pfam CID domain 451 579 IPR006569 -
Ahy11g0076 975 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 267 IPR000504 GO:0003723
Ahy11g0076 975 MobiDBLite consensus disorder prediction 908 975 - -
Ahy11g0076 975 MobiDBLite consensus disorder prediction 411 444 - -
Ahy11g0076 975 SUPERFAMILY ENTH/VHS domain 448 585 IPR008942 -
Ahy11g0076 975 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 260 IPR000504 GO:0003723
Ahy11g0076 975 SMART 558neu5 451 586 IPR006569 -
Ahy11g0076 975 Coils Coil 17 37 - -
Ahy11g0076 975 SMART rrm1_1 187 263 IPR000504 GO:0003723
Ahy11g0076 975 MobiDBLite consensus disorder prediction 418 444 - -
Ahy11g0076 975 Gene3D Surp module 322 391 IPR035967 GO:0003723|GO:0006396
Ahy11g0076 975 ProSiteProfiles CID domain profile. 444 589 IPR006569 -
Ahy11g0076 975 Gene3D - 444 590 IPR008942 -
Ahy11g0076 975 ProSiteProfiles SURP motif repeat profile. 336 379 IPR000061 GO:0003723|GO:0006396
Ahy11g0076 975 SMART surpneu2 334 388 IPR000061 GO:0003723|GO:0006396
Ahy11g0076 975 MobiDBLite consensus disorder prediction 99 169 - -
Ahy11g0076 975 SUPERFAMILY Surp module (SWAP domain) 310 391 IPR035967 GO:0003723|GO:0006396
Ahy11g0076 975 SUPERFAMILY RNA-binding domain, RBD 179 274 IPR035979 GO:0003676
Ahy11g0076 975 Coils Coil 842 866 - -
Ahy11g0076 975 MobiDBLite consensus disorder prediction 11 35 - -
Ahy11g0076 975 CDD RRM_SR140 185 268 IPR035009 -
Ahy11g0076 975 MobiDBLite consensus disorder prediction 720 743 - -
Ahy11g0076 975 MobiDBLite consensus disorder prediction 1 181 - -
Ahy11g0076 975 MobiDBLite consensus disorder prediction 746 780 - -
Ahy11g0076 975 Pfam Surp module 334 386 IPR000061 GO:0003723|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g0076 Ahy-Chr11 751561 759776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g0076 169 263 Eukaryotic Initiation Factors Gene Family AT1G22760 31.579 1.93e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g0076 K12842 - gmx:100776093 1642.09