Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g0059 ATGGATCCTGGTCGCTATGGTCTTCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGTTATGGTGCGGTCCATGAGCCAAATTATCGGGTTGGGGGTGCTTATGAGGATAGACGCTTTGTAGATGAAAGATATCCAAGGGATGCCATATACCAGAGAAATGCTTTCCATCGTGACATTTTGGATAGGGAGGGCTATATGCCACCAGGACCTCCTGTTGGCCACTGGAATCAATCCAAAAGGAGAGGTTATGAGGAAGATTATCCAATTGACAGAGAATCTAGACGTTTTCAGAGGCCTTATCATGAGCCATATAATCAGATTGATGCCTACAGGGAAGCCGATATTGACACGTTCCCAGAATATGATAAGTTTCGAGATGGTTATGGCAGCATTGAAAACTATGGTGATCGAGGATATGATAAACCTGCCAGGTTTGGAGGACATGACCGTGATGATTATGCATATGATGACTATGGCTACAAGTCCCGTGCTTCTCATCATCGTAGGGAGGATAGCCATGAGAGGGATTATGATCATGGCCGCCATAGTTATGATTCTGATTATGAAAGAGGCAGTAGAAGAGATAGTAACTGGAGGCGACGTGGATCACGTGATCGAGAACATGATAGAAGAGGTCTTAGTCGGGAAAGAGATGTAAGCCCGCGTAAGAGGCGTGAGCATTCTCATTCTAGGTCCCGGTCCCGTTCCCGGTCCCGGTCCAAATCTCAGTCCCATTCCCGATCCCGCTCCCAGTCTCGTGGATACGACGATCATCCAAGATCAAGGTCCCCTCGAGGTCGAAGCCATAGTCGGAGTTATAGAGAAGATAGCTATAGTGACAGTCGATACGATAGAAGTGAAAGACGCAGGGATCGTGAGGATAAACGTCAGCGTGAACATTATTCAGTGGCCCCATCTGCAACTATTGTTGTGAAAGGTCTCTCACAGAAAACTACTGAGGAGGATCTGTACCAAATACTTGCGGAGTGGGGACCCCTTCGTCATGTTCGTGTTATAAAGGAAAGAAATTCTGGCATTTCTCGGGGATTTGCGTTTATCGATTTTCCTTCTGTGGGAGCCGCACAAGCAATGATGGACAAGCTAGGAGATGATGGTCTTGTTGTGGATGGCAGAAAGCTTTTCTTCGAATATAGTAAACCTACTGGTGGTCCAGGTCCTGATGGAGCTATGAAATCAGGCCATAATCATAAGAGCATTACAATACCATCTGATTGGATGTGCACTATATGTGGCTACATCAATTTTGCACGTCGTACCTCTTGTTATCAGTGTAATGAGCCACGAACTGAGGATGCTCCTGCAGCAGATATTTCATTAACAAATTCATCAGCCATAGGGAAGAAGGGTCTGGAGGCAGGTCCAACTCATGTTTTGGTTGTTCGCGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCTAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGACAAGTTTACACATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAGGATGCTACCAAAGCTCTTGAGGCAACAAATGGGACTACTCTTGAGAAGAATGGACAAATTCTAAGAGTGGCATATGCTAAAAGTATCTTGGGCCCTGGATCAGGAGCACCAGGAACTTCCCAATCAAGCAGCCTTGCAGCAGCTGCTATTGAGGCTGCGACCTTTGCTCAACAGTATGATTCTGTGGGGTGGGCTCCAAAAGAATACAATCCCGATGATAAGCAAGCTACTGCTCCTGAGCAAAGCACCGCAGGTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCCGGTTATTACTATGATGCCGCATCTGGGTTTTACTACGATGGAAATACTGGTCTTTACTACGATGGTAATAATGGGATATGGTATACGTATGACCACCAAACTCAACAGTACATCCCTTGCACTGAACAAAACCAAAACAACACAGCTAACCAGCAGTCTGAACCTTCCAAGGCATCTGATGGTGCCAGTAGTAAAAAGGTGGTAATTTCTGCACCGGCTTCTACTGTTGCATCAGTTGAGAAGCCTGCATCATTGGCAGATGCTGTGCAGGCTGCTGCAACGGCTGCTTTAGCTGCTGAGAAGAAAGAAAAAGAGAAGGCAAAGGAGATAAAACTTGCCTCAAAAAGCAGTATTCTAGCAAACAAGAAAAAAATGAACAATGTGTTGTCAATGTGGAAGCAGAGGAGCCATGAAGGGCAGGCTACTCGAGTAGCCTTGGAGGACAATCAACTCTCTGTTTCCACCGACGATAGGTCATACCCTACAAAGAACAGGTTAAAAGGTGAATCTATGCCTAGGGAAACCAATGTATCTAGCTTGGGAACACATACAACTGTTATCCAGGCTGCTGGTTTGGACTCTCAGGCGCAGGCACGCCCTGTTAGTAATAGTCTTGGTGGAACTATTATGGGAGTTATAAGGGGTTCAGGAAGAGGGGTTGTCAAGTCAGATACCTACCCTGGTTCTACAGCTTCTCCATCATCATTCTCAAGTTCTTCAGCTGCAAGTGTCGATGCACAGATAAGTTCAACTCCTTTTAGAACAGATGTCTCTGCCTTGGGTTCATATACACCATCAGTGGCTGCTGGAAGTGGCAGAAGAAGGTTTTCAGAAGCGCCTAGTTCCGCTTCAATTCATAAGGAGCAACCTCAAACAACCTATAGGGATCGTGCAGCTGAGAGGAGAAGTTTGTATGGCTCATCATCATCGGGTGGGAATGATTTGGCTGATTATGAAATTGGGGATTCAAATCGAGATTTTGTGTCGAGGAAGGGTGATCCTATGCCTTTTCCTCCTGGGGTTGGTGGAGGACGTGCAGTTGGAGAAGTCAACCTTGATACTTTTGAGGTGATTACAGCAGAAAAAGCACTTGATGAAAACAATGTTGGCAATCGTATGCTTCGCAACATGGGATGGCAGGAAGGCTTGGGACTTGGAAAGGATGGGAGTGGAATGGTAGAGCCAGTGCAGGCACAAGCCATGGAGAATAGAGCAGGACTTGGAAGTCAGCAGAAGAAGTTAGATCCTAGCCTTGAGGTGCAGGCAGGGGACAGTTATAAGATGCTTATTCATAAAAAGGCACTTGCCAGGTTCCGGGAAATGAATGACAGTTAA 3177 0.4602 MDPGRYGLHQGWDNNSALEGYGAVHEPNYRVGGAYEDRRFVDERYPRDAIYQRNAFHRDILDREGYMPPGPPVGHWNQSKRRGYEEDYPIDRESRRFQRPYHEPYNQIDAYREADIDTFPEYDKFRDGYGSIENYGDRGYDKPARFGGHDRDDYAYDDYGYKSRASHHRREDSHERDYDHGRHSYDSDYERGSRRDSNWRRRGSRDREHDRRGLSRERDVSPRKRREHSHSRSRSRSRSRSKSQSHSRSRSQSRGYDDHPRSRSPRGRSHSRSYREDSYSDSRYDRSERRRDREDKRQREHYSVAPSATIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAAQAMMDKLGDDGLVVDGRKLFFEYSKPTGGPGPDGAMKSGHNHKSITIPSDWMCTICGYINFARRTSCYQCNEPRTEDAPAADISLTNSSAIGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGAPGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQATAPEQSTAGGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYTYDHQTQQYIPCTEQNQNNTANQQSEPSKASDGASSKKVVISAPASTVASVEKPASLADAVQAAATAALAAEKKEKEKAKEIKLASKSSILANKKKMNNVLSMWKQRSHEGQATRVALEDNQLSVSTDDRSYPTKNRLKGESMPRETNVSSLGTHTTVIQAAGLDSQAQARPVSNSLGGTIMGVIRGSGRGVVKSDTYPGSTASPSSFSSSSAASVDAQISSTPFRTDVSALGSYTPSVAAGSGRRRFSEAPSSASIHKEQPQTTYRDRAAERRSLYGSSSSGGNDLADYEIGDSNRDFVSRKGDPMPFPPGVGGGRAVGEVNLDTFEVITAEKALDENNVGNRMLRNMGWQEGLGLGKDGSGMVEPVQAQAMENRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREMNDS* 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g0059 1058 MobiDBLite consensus disorder prediction 660 679 - -
Ahy11g0059 1058 MobiDBLite consensus disorder prediction 660 674 - -
Ahy11g0059 1058 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 464 544 IPR000504 GO:0003723
Ahy11g0059 1058 SUPERFAMILY RNA-binding domain, RBD 297 395 IPR035979 GO:0003676
Ahy11g0059 1058 Pfam G-patch domain 981 1022 IPR000467 GO:0003676
Ahy11g0059 1058 ProSiteProfiles G-patch domain profile. 980 1026 IPR000467 GO:0003676
Ahy11g0059 1058 ProSitePatterns Zinc finger RanBP2-type signature. 413 432 IPR001876 -
Ahy11g0059 1058 MobiDBLite consensus disorder prediction 765 792 - -
Ahy11g0059 1058 Gene3D - 449 585 IPR012677 -
Ahy11g0059 1058 Gene3D - 273 407 IPR012677 -
Ahy11g0059 1058 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 466 532 IPR000504 GO:0003723
Ahy11g0059 1058 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 370 IPR000504 GO:0003723
Ahy11g0059 1058 MobiDBLite consensus disorder prediction 251 302 - -
Ahy11g0059 1058 CDD RRM1_RRM2_RBM5_like 462 542 - -
Ahy11g0059 1058 SMART zf_4 411 435 IPR001876 -
Ahy11g0059 1058 MobiDBLite consensus disorder prediction 164 302 - -
Ahy11g0059 1058 SUPERFAMILY Ran binding protein zinc finger-like 404 439 IPR036443 -
Ahy11g0059 1058 CDD OCRE_SUA_like 601 654 IPR035623 -
Ahy11g0059 1058 PANTHER RNA-BINDING PROTEIN 219 1055 - -
Ahy11g0059 1058 PANTHER RNA-BINDING PROTEIN 38 212 - -
Ahy11g0059 1058 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 388 IPR000504 GO:0003723
Ahy11g0059 1058 Pfam OCRE domain 605 653 IPR041591 -
Ahy11g0059 1058 PANTHER FI21118P1 219 1055 - -
Ahy11g0059 1058 PANTHER FI21118P1 38 212 - -
Ahy11g0059 1058 CDD RRM1_RRM2_RBM5_like 306 386 - -
Ahy11g0059 1058 Gene3D - 408 439 - -
Ahy11g0059 1058 SUPERFAMILY RNA-binding domain, RBD 462 548 IPR035979 GO:0003676
Ahy11g0059 1058 SMART G-patch_5 978 1024 IPR000467 GO:0003676
Ahy11g0059 1058 MobiDBLite consensus disorder prediction 580 605 - -
Ahy11g0059 1058 MobiDBLite consensus disorder prediction 130 151 - -
Ahy11g0059 1058 ProSiteProfiles Zinc finger RanBP2 type profile. 409 438 IPR001876 -
Ahy11g0059 1058 MobiDBLite consensus disorder prediction 164 226 - -
Ahy11g0059 1058 MobiDBLite consensus disorder prediction 876 911 - -
Ahy11g0059 1058 SMART rrm1_1 465 540 IPR000504 GO:0003723
Ahy11g0059 1058 SMART rrm1_1 309 384 IPR000504 GO:0003723
Ahy11g0059 1058 MobiDBLite consensus disorder prediction 227 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g0059 Ahy-Chr11 601140 608935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy11g0059 307 528 Eukaryotic Initiation Factors Gene Family AT2G36660 25.301 1.29e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g0059 K13094 - gmx:100787998 1645.17