Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy11g0053 ATGGCGGAAGAGCGGTTCACCGGCGTTGTTATGTGGTTCAACAACACCAAGGGCTTCGGCTTCATCAAGCCCGACGATGGCGGCGAAGATCTCTTCGTCCACCAGTCTTCCATCAGATCCGACGGTTACCGCACTCTCCACGAAGGCGATCGCGTCCAGTTCTCCATCGCCACCGGCGACAACCACAAGACCAAGGCCGTTGATGTAACTGCTCCCGACGGCAATCCCCTACACTCTCGTCCCAAGGAATCCGGCGGATCCGGATTTGGCGCCGGATGGAGGCGAAACGGCGGCGCCGGTGGAGGTGGAGGTGGTGCTGCGGGATCAGGTGGCGCCGGGTGCTACCACTGCGGCGAAGTCGGACACCTGGCTAGGGATTGCAACCGGAGCAACAATTCTGGTGGCGCTGGTGGCGGTAGTGGTGGTGCATGTTTTAATTGCGGCGGATTTGGGCATCTCGCTAGGGATTGCTTGCGAGGAAGCGGTGGCGGTAACGGTAATGTTCACGGTGGTGGTGGTGGTGGAGGTGTCGGTGGTGTTTCGTGCTTTAGATGCGGTGGATTTGGTCACATGGCGAGGGACTGTGCTACCGCGAGAACTGGCGGCGGTGCAGGTGGCGGCGCTGGTGGTGGTGGTTGCTATAGGTGCGGTGAGGTTGGTCACTTGGCTAGGGATTGCAGCAATGAAGGTGGAAGGTATGGTGGCGGAGGCGGCGGTGGCAATGGTAATGGTTCTAGAAGCACTTGCTTCAATTGTGGTAAGCCTGGGCATTTTGCAAGGGAGTGCGTTGAAGCCTCTGGTTGA 804 0.5933 MAEERFTGVVMWFNNTKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLHEGDRVQFSIATGDNHKTKAVDVTAPDGNPLHSRPKESGGSGFGAGWRRNGGAGGGGGGAAGSGGAGCYHCGEVGHLARDCNRSNNSGGAGGGSGGACFNCGGFGHLARDCLRGSGGGNGNVHGGGGGGGVGGVSCFRCGGFGHMARDCATARTGGGAGGGAGGGGCYRCGEVGHLARDCSNEGGRYGGGGGGGNGNGSRSTCFNCGKPGHFARECVEASG* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy11g0053 267 PANTHER COLD SHOCK PROTEIN 2 101 172 - -
Ahy11g0053 267 Gene3D - 1 70 IPR012340 -
Ahy11g0053 267 SUPERFAMILY Retrovirus zinc finger-like domains 109 159 IPR036875 GO:0003676|GO:0008270
Ahy11g0053 267 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Ahy11g0053 267 SUPERFAMILY Retrovirus zinc finger-like domains 231 263 IPR036875 GO:0003676|GO:0008270
Ahy11g0053 267 MobiDBLite consensus disorder prediction 66 91 - -
Ahy11g0053 267 Gene3D - 173 238 - -
Ahy11g0053 267 PANTHER COLD SHOCK DOMAIN PROTEIN 2 101 172 - -
Ahy11g0053 267 Pfam Zinc knuckle 113 127 IPR001878 GO:0003676|GO:0008270
Ahy11g0053 267 Pfam Zinc knuckle 181 196 IPR001878 GO:0003676|GO:0008270
Ahy11g0053 267 Pfam Zinc knuckle 248 262 IPR001878 GO:0003676|GO:0008270
Ahy11g0053 267 Pfam Zinc knuckle 143 157 IPR001878 GO:0003676|GO:0008270
Ahy11g0053 267 Pfam Zinc knuckle 212 227 IPR001878 GO:0003676|GO:0008270
Ahy11g0053 267 ProSiteProfiles Zinc finger CCHC-type profile. 213 228 IPR001878 GO:0003676|GO:0008270
Ahy11g0053 267 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 105 - -
Ahy11g0053 267 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Ahy11g0053 267 SUPERFAMILY Nucleic acid-binding proteins 4 75 IPR012340 -
Ahy11g0053 267 ProSiteProfiles Zinc finger CCHC-type profile. 249 262 IPR001878 GO:0003676|GO:0008270
Ahy11g0053 267 CDD CSP_CDS 7 70 IPR002059 GO:0003676
Ahy11g0053 267 ProSiteProfiles Zinc finger CCHC-type profile. 182 195 IPR001878 GO:0003676|GO:0008270
Ahy11g0053 267 PANTHER COLD SHOCK PROTEIN 2 1 105 - -
Ahy11g0053 267 SMART csp_8 7 72 IPR011129 GO:0003676
Ahy11g0053 267 PANTHER COLD SHOCK PROTEIN 2 165 266 - -
Ahy11g0053 267 ProSiteProfiles Zinc finger CCHC-type profile. 144 157 IPR001878 GO:0003676|GO:0008270
Ahy11g0053 267 SUPERFAMILY Retrovirus zinc finger-like domains 172 229 IPR036875 GO:0003676|GO:0008270
Ahy11g0053 267 SMART c2hcfinal6 248 264 IPR001878 GO:0003676|GO:0008270
Ahy11g0053 267 SMART c2hcfinal6 143 159 IPR001878 GO:0003676|GO:0008270
Ahy11g0053 267 SMART c2hcfinal6 181 197 IPR001878 GO:0003676|GO:0008270
Ahy11g0053 267 SMART c2hcfinal6 212 228 IPR001878 GO:0003676|GO:0008270
Ahy11g0053 267 SMART c2hcfinal6 113 129 IPR001878 GO:0003676|GO:0008270
Ahy11g0053 267 ProSiteProfiles Zinc finger CCHC-type profile. 114 127 IPR001878 GO:0003676|GO:0008270
Ahy11g0053 267 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Ahy11g0053 267 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Ahy11g0053 267 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Ahy11g0053 267 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Ahy11g0053 267 Gene3D - 240 267 - -
Ahy11g0053 267 Gene3D - 109 137 - -
Ahy11g0053 267 Gene3D - 139 166 - -
Ahy11g0053 267 PANTHER COLD SHOCK DOMAIN PROTEIN 2 165 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy11g0053 Ahy-Chr11 556389 557570 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Ahy11g0053 CSD 5.30E-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy11g0053 K09250 - gmx:100806783 309.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy11g0053 11 556389 557570 Ahy1g0742 1 11201735 11202849 hybridization