Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2786 ATGGGAAGGGGAAAGATAGAGATAAAGAGGATAGAAAACACGACGACGAGGCAAGTGACGTTCTCAAAGAGAAGGAACGGACTCCTGAAGAAGACAAATGAGCTCTCTGTCCTCTGTGACGCCCAGATCGGACTCATCGTCTTCTCCAACACTGGCAAGCTCTTTCACTACTCCTCTCACCCCTACAGGATGGATCAAATAATTGAAAAGTACCAACGATCTACAGGGACTCGCATAACGCGCCATGGACATTCCCACCTTCAGGAAGATTTATTGACTGAGATGGCAATGCTGAGGCGTCAAAATCTGAGCCTTGAGATGGGGATTCAGCGCTACCTTGGAGAGGGTATAGCTTGTCTCCGATATGAAGAATTGACTAAGCTTGAAGATGAAGTTCAAAGCTCTGTTGCAAGGATTCGAAAGCGTCAGAATGAGCTCCTGCAGCAGCAATTGGAGAACCTGCGAAGGAAGGAAAGAATCTTGGAAGATGAAAACTGCAATTTGTCCAATTGGGAGCAGCAAACTGCTGTATTGGAGTTTGAAAGGGCTGCAGCAAGTAACGGTGGTGATAACAAAGCAGTGATGGATCATCATCATCATCATCATCAGTTGCCATTCTACGATGATGAGCAAGCTTCTGCTTCTGCTGGCACCATCCTTCAGCTTGGTGCACCACATGTACCACAGCAGCTTCATCCATATCCATATCCATATCTTCAGCTTGCACAGCCCAATGTTGATCATGACTCACTCACTGGACTACTCATGGGGCCATCAAAATGGGTGATAGAGAAGGACGGAGGAGTTCCCTTCGATGCATGA 822 0.4696 MGRGKIEIKRIENTTTRQVTFSKRRNGLLKKTNELSVLCDAQIGLIVFSNTGKLFHYSSHPYRMDQIIEKYQRSTGTRITRHGHSHLQEDLLTEMAMLRRQNLSLEMGIQRYLGEGIACLRYEELTKLEDEVQSSVARIRKRQNELLQQQLENLRRKERILEDENCNLSNWEQQTAVLEFERAAASNGGDNKAVMDHHHHHHQLPFYDDEQASASAGTILQLGAPHVPQQLHPYPYPYLQLAQPNVDHDSLTGLLMGPSKWVIEKDGGVPFDA* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2786 273 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Ahy10g2786 273 Coils Coil 125 174 - -
Ahy10g2786 273 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy10g2786 273 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 216 IPR031050 GO:0005634|GO:0048316
Ahy10g2786 273 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy10g2786 273 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Ahy10g2786 273 Pfam K-box region 85 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy10g2786 273 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy10g2786 273 ProSiteProfiles K-box domain profile. 88 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy10g2786 273 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy10g2786 273 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy10g2786 273 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy10g2786 273 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ahy10g2786 273 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Ahy10g2786 273 PANTHER MADS BOX PROTEIN 1 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2786 Ahy-Chr10 117028420 117030912 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2786 1 249 MADS-box Gene Family AT5G23260 45.525 1.28e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy10g2786 K-box 2.40E-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2786 - - adu:107471830 526.168