Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2785 ATGGGAAGGGGAAAGATAGAGATAAAGAGGATAGAAAACACGACGACGAGGCAAGTGACATTCTCAAAGAGAAGGAACGGACTCCTGAAGAAGACCAATGAGCTCTCTGTCCTCTGTGACGCCCAGATCGGACTCATCGTCTTCTCCAACACTGGCAAGCTCTTTCGCTACTTCTCTCACCCCTACAGGGACTCGCATAACGCCCCATGGACATTCCCACCATCAGGAAGATTTATTGACTGA 243 0.4938 MGRGKIEIKRIENTTTRQVTFSKRRNGLLKKTNELSVLCDAQIGLIVFSNTGKLFRYFSHPYRDSHNAPWTFPPSGRFID* 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2785 80 CDD MADS_MEF2_like 2 59 IPR033896 GO:0000977|GO:0045944
Ahy10g2785 80 SUPERFAMILY SRF-like 2 67 IPR036879 GO:0003677|GO:0046983
Ahy10g2785 80 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy10g2785 80 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy10g2785 80 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy10g2785 80 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy10g2785 80 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 59 IPR031050 GO:0005634|GO:0048316
Ahy10g2785 80 Gene3D - 13 69 IPR036879 GO:0003677|GO:0046983
Ahy10g2785 80 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy10g2785 80 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy10g2785 80 PANTHER MADS BOX PROTEIN 1 59 - -
Ahy10g2785 80 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2785 Ahy-Chr10 117012999 117013966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2785 1 61 MADS-box Gene Family AT2G03710 70.492 1.51e-27 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy10g2785 SRF-TF 1.00E-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2785 - - adu:107471830 124.02