Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2708 ATGGCTTCCTCTAGCCGTCAACAAAACAAGCATTCTCCTTCTTTTTCTACTTCTACTGGAACCAGTTTCTTTAAGATTATTCTCAGAAAAGCTCTTCAAAATGAAAACTTTAAGTTAACAAAAAAGTTCACTACACAATATGGTTCTGTCGTATCAAACCCATTGTATCTTAAGCCTCGAGATGGTATTGAATGGAAAGTCTATTGGACTAAACATGATGGTGCAATTTTGTTTAAAAAGGGTTGGAAAGAGTTTGTTGCATATTACTCTCTTGATCATGGCCATTTGTTATGGTTTGAGTACAATATTGGAACATCTTACATTGAAGTACGCATATATGACATGAGTTGCCATGAAATAAAGTATCCTGCCAATGATCAGATCAAAGAGCAGTCGCCATGCAGGGGCCAGCAGCCGGTGAAAAGGCCAAAAGAACCAAAAATTATAGATGTGGATAGCAGTCCCAACACTCAAAACATGAGACTTAACGAGGGACAACAGAAGAAAAGATTGAATGAACCACGGTCAGGAAGAGTCCGGAGCCAACCGAGAAAAAAAATGAGAGCACTAGTGTCATCTGCTTCTAAAAGTAGACAGTTGGAAGATGACACACAAATCAGGAATGTTGAAAGAAGCCTCAATTCACACGATATAAAATCCAATGAGAAAAACTATGAGATGCCAGTGTCTGTCAATCGAGATTCTAATGGTAAAAGGAACAGAAGAAGAAAAGGTTCTGAATCTCCTGTTATGCCCTGTCTTACAAGACTTGAATCTCTGAAAGAAGCTAAGAAGTTTAAGTGGGAAAAGCCCTCTTTCATCATCAAGATAACGCAACGGTCTCAAACGAGAGCACCATGTTACTTTTCAACTAAATTCTTCAGAAAGTATTTTGAAAATAATCCACAAAATGCAAATATAAGATTTGGAAAGAAGTTGTTCCCTGTTAAGTTGATCTACAGGCCATCATCATGTGTTGCCTTTATATCTGCTGGTTGGAACCTTTTTGCTCGAGCTAGTAAATTACAAGCCGGAGATGTTTGTTTGTTTAAGCTCATCAATAGAAAGGATCCGGTGTGA 1080 0.3806 MASSSRQQNKHSPSFSTSTGTSFFKIILRKALQNENFKLTKKFTTQYGSVVSNPLYLKPRDGIEWKVYWTKHDGAILFKKGWKEFVAYYSLDHGHLLWFEYNIGTSYIEVRIYDMSCHEIKYPANDQIKEQSPCRGQQPVKRPKEPKIIDVDSSPNTQNMRLNEGQQKKRLNEPRSGRVRSQPRKKMRALVSSASKSRQLEDDTQIRNVERSLNSHDIKSNEKNYEMPVSVNRDSNGKRNRRRKGSESPVMPCLTRLESLKEAKKFKWEKPSFIIKITQRSQTRAPCYFSTKFFRKYFENNPQNANIRFGKKLFPVKLIYRPSSCVAFISAGWNLFARASKLQAGDVCLFKLINRKDPV* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2708 359 MobiDBLite consensus disorder prediction 200 223 - -
Ahy10g2708 359 SUPERFAMILY DNA-binding pseudobarrel domain 18 116 IPR015300 -
Ahy10g2708 359 SMART B3_2 273 359 IPR003340 GO:0003677
Ahy10g2708 359 SMART B3_2 23 116 IPR003340 GO:0003677
Ahy10g2708 359 Gene3D - 14 117 IPR015300 -
Ahy10g2708 359 CDD B3_DNA 22 114 IPR003340 GO:0003677
Ahy10g2708 359 SUPERFAMILY DNA-binding pseudobarrel domain 269 355 IPR015300 -
Ahy10g2708 359 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 17 355 - -
Ahy10g2708 359 MobiDBLite consensus disorder prediction 151 165 - -
Ahy10g2708 359 ProSiteProfiles B3 DNA-binding domain profile. 314 359 IPR003340 GO:0003677
Ahy10g2708 359 Gene3D - 255 359 IPR015300 -
Ahy10g2708 359 MobiDBLite consensus disorder prediction 166 180 - -
Ahy10g2708 359 ProSiteProfiles B3 DNA-binding domain profile. 22 116 IPR003340 GO:0003677
Ahy10g2708 359 PANTHER B3 DOMAIN-CONTAINING 17 355 - -
Ahy10g2708 359 MobiDBLite consensus disorder prediction 128 249 - -
Ahy10g2708 359 CDD B3_DNA 271 356 IPR003340 GO:0003677
Ahy10g2708 359 Pfam B3 DNA binding domain 283 356 IPR003340 GO:0003677
Ahy10g2708 359 Pfam B3 DNA binding domain 24 102 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2708 Ahy-Chr10 116304991 116307943 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2708 23 359 B3 DNA Binding Superfamily AT3G18990 24.501 1.25e-17 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy10g2708 B3 7.00E-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2708 - - ahf:112717085 724.546