Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2693 ATGATTTTGGAACAGCGTATACCAATCGAGTTTTCGAGAGTGCACTTACATGGGTTAGAGGGAAAAGCCAAAATTGGAGTTAATGGTAACATGAGATGGGATATTGTGTTAAGATTTTGTGGTGATAGAGCTACTTTCAGTGCTGGTTGGAGAAATGTTTCCAATGATTTTGGCTTAAAATTTGGTGATGTTTGTGTTTTTGAGATGATTAAGGACACTCCACTTTCCTTCAACATTTTTCTCATCAGACCCAAACAGCAACCAATAAGCCTTTGCCACCAAAACTTGCCAGGAGCTCCCAACATGCAGGATGATGAATTTATCCTTGAAATTAAAGATTATCACCTTAGTGGATCTACTGTGTTCATACCAAATGGATTTTGTCGTAGGCACAAAGATTGTCTTGGAAAACTTGTGAATTTGAAATTTGGAGAAATTTTACGGCCAGTGAAATTGTTAGCACGCGGTGCATTTTCTGAAGGATGGTTGAATTTTGCAAAAGAATGCAAATTGAATGCTGGTGACTTTTGTTCCTTCAAACTTGTTGATGACCAAAATCCTATCTTTGAAGTTTCAACTGTAAAATCAAAATAG 594 0.3704 MILEQRIPIEFSRVHLHGLEGKAKIGVNGNMRWDIVLRFCGDRATFSAGWRNVSNDFGLKFGDVCVFEMIKDTPLSFNIFLIRPKQQPISLCHQNLPGAPNMQDDEFILEIKDYHLSGSTVFIPNGFCRRHKDCLGKLVNLKFGEILRPVKLLARGAFSEGWLNFAKECKLNAGDFCSFKLVDDQNPIFEVSTVKSK* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2693 197 SUPERFAMILY DNA-binding pseudobarrel domain 106 185 IPR015300 -
Ahy10g2693 197 PANTHER B3 DOMAIN-CONTAINING 112 195 - -
Ahy10g2693 197 SMART B3_2 107 192 IPR003340 GO:0003677
Ahy10g2693 197 SMART B3_2 1 83 IPR003340 GO:0003677
Ahy10g2693 197 CDD B3_DNA 6 80 IPR003340 GO:0003677
Ahy10g2693 197 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 112 195 - -
Ahy10g2693 197 Gene3D - 99 197 IPR015300 -
Ahy10g2693 197 Gene3D - 3 86 IPR015300 -
Ahy10g2693 197 ProSiteProfiles B3 DNA-binding domain profile. 1 85 IPR003340 GO:0003677
Ahy10g2693 197 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 7 78 - -
Ahy10g2693 197 PANTHER B3 DOMAIN-CONTAINING 7 78 - -
Ahy10g2693 197 SUPERFAMILY DNA-binding pseudobarrel domain 6 80 IPR015300 -
Ahy10g2693 197 Pfam B3 DNA binding domain 6 79 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2693 Ahy-Chr10 116171840 116173580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2693 1 75 B3 DNA Binding Superfamily AT5G18090 33.333 2.63e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ahy10g2693 B3 6.00E-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2693 - - adu:110277002 385.571