Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2555 ATGGTGGCAAGAAATGGTTCTAATGATGATCTCAAATATGAAAAACATCAAGCATCAAACCTCCACAAAAATTCCCATATGCTAGAATTTGTAAAGTTAGCCAATGATGGTTCAATTCATGGGTCCAAAGTAGTGGAAGAACATGATTTTTTCCACATAGAGCACAAGACATCATCAAATAATTTAGAGGCAAAGGCTTTTTCATGCAACTATTGTAAGAAGGAGTTCTCTTCTTCACAAGCATTAGGAGGGCACCAGAATGCACATAAACAAGAGCGCGCGTTAGCGAAATGTTGCCGAGGGATTGATGATGGTGGTTTTGGTTACCCTTACTGTTTTTCCTATCACCCTTACCCTAGCTTTCCCGCACACCATTTTTGTGGTTCTTCTTATAACAATAATAATACTATTAGGGCACTTGGAGTTAGGGTGGAATCCATGATTCATAAGCCAAATTTATGTCCCAATAAATGGAGTGGAATCATGATGAGACATACAAAGAAGCCAGAAGGCCCCTCTAGCTCTATGCTTGATTTGTCACTTAAGCTCTAA 552 0.3913 MVARNGSNDDLKYEKHQASNLHKNSHMLEFVKLANDGSIHGSKVVEEHDFFHIEHKTSSNNLEAKAFSCNYCKKEFSSSQALGGHQNAHKQERALAKCCRGIDDGGFGYPYCFSYHPYPSFPAHHFCGSSYNNNNTIRALGVRVESMIHKPNLCPNKWSGIMMRHTKKPEGPSSSMLDLSLKL* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2555 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 94 IPR013087 -
Ahy10g2555 183 SUPERFAMILY beta-beta-alpha zinc fingers 64 94 IPR036236 -
Ahy10g2555 183 PANTHER ZINC FINGER PROTEIN JAGGED 10 175 IPR045320 GO:0003700
Ahy10g2555 183 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 10 175 - -
Ahy10g2555 183 Gene3D Classic Zinc Finger 40 101 - -
Ahy10g2555 183 Pfam C2H2-type zinc finger 66 91 - -
Ahy10g2555 183 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2555 Ahy-Chr10 115064439 115065234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2555 20 150 C2H2 Transcription Factor Family AT5G25160 40.602 8.04e-19 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy10g2555 zf-C2H2_6 2.40E-07 CL0361