Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy10g2540 ATGGCGCCCAAGAGAGCACACACCGATAGCGACGACGAAGACGACATCTTCTACTACCGCTTCTGCTCTTCTTCCTCATCTGCCCAAGCCCAGGCCCAGGCCCAGGCCCAGACTAAGACTATTACTACTGCTGCTGGATCCGCTTCTTCTTCTTCTTCCTTGGCTCCCTCAAAATCAACCCTCTACGTTTCCAACCTGGACTACGCCCTAACCAACTCCGACCTCCACACACTCTTCTCCACCTTCGGCCGCATTGCCCGCGTAACCGTTCTCAAGGACCGCCACACCCGACTCAGTCGCGGCGTCGCCTTCGTCCAATTCGTCACTCGCGAAGACGCCCGCCGCGCCGCTGATCAAATGCACGGCAAGATCCTCAACGGCCGCACGCTCTCCGCCTCCATCGCACTCGACAACGGCCGCGCTCCGGAGTTCATTCGCAAGCGCGTCTACAAGGACACTGGCCGCTGCTTCGAGTGCGGCCAGTCCGGACACCTCTCCTACGACTGTCCCCGCAACCGCCTGGGTCCTCGCCAGCGCCCGCCTCCGAAGCGTGGCAGGCGCGGAGGCGGCGGAGGTTTGGGAAGAGGCGGGAGAGGCAGCCGGCGAAGGGAGGAAGATGACGATGACGATGATGATGACGATGAGGGATCAGACGGTGGCGGCGCCGGCGCGGAGCGGTTTGAGGATGATAATTGGGCTTCGGTTGTAGACGGCGGCGCCGATGAGAGGCTTTTGGGGAGGAATGAGAAGGTTGTTGCCAAGAAGAAAGAGAAGAAAGCTGGGTACTTCAGCGACGAGAGCGATGAAGATGATGAATGA 819 0.6044 MAPKRAHTDSDDEDDIFYYRFCSSSSSAQAQAQAQAQTKTITTAAGSASSSSSLAPSKSTLYVSNLDYALTNSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFVQFVTREDARRAADQMHGKILNGRTLSASIALDNGRAPEFIRKRVYKDTGRCFECGQSGHLSYDCPRNRLGPRQRPPPKRGRRGGGGGLGRGGRGSRRREEDDDDDDDDDEGSDGGGAGAERFEDDNWASVVDGGADERLLGRNEKVVAKKKEKKAGYFSDESDEDDE* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy10g2540 272 SMART rrm2_1 60 133 IPR003954 GO:0003676
Ahy10g2540 272 SMART rrm1_1 60 133 IPR000504 GO:0003723
Ahy10g2540 272 SMART c2hcfinal6 155 171 IPR001878 GO:0003676|GO:0008270
Ahy10g2540 272 ProSiteProfiles Zinc finger CCHC-type profile. 155 171 IPR001878 GO:0003676|GO:0008270
Ahy10g2540 272 MobiDBLite consensus disorder prediction 167 249 - -
Ahy10g2540 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 59 137 IPR000504 GO:0003723
Ahy10g2540 272 SUPERFAMILY Retrovirus zinc finger-like domains 138 173 IPR036875 GO:0003676|GO:0008270
Ahy10g2540 272 Pfam Zinc knuckle 155 170 IPR001878 GO:0003676|GO:0008270
Ahy10g2540 272 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 9 271 - -
Ahy10g2540 272 SUPERFAMILY RNA-binding domain, RBD 48 143 IPR035979 GO:0003676
Ahy10g2540 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 130 IPR000504 GO:0003723
Ahy10g2540 272 Gene3D - 4 134 IPR012677 -
Ahy10g2540 272 Gene3D - 146 186 - -
Ahy10g2540 272 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 9 271 IPR044598 GO:0000398|GO:0005689
Ahy10g2540 272 CDD RRM_ZCRB1 60 135 IPR034219 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy10g2540 Ahy-Chr10 114918158 114919454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy10g2540 61 135 Eukaryotic Initiation Factors Gene Family AT1G34140 40.789 2.71e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy10g2540 K13154 - gmx:100814914 301.982